View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14754_low_8 (Length: 287)
Name: NF14754_low_8
Description: NF14754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14754_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 26128652 - 26128925
Alignment:
| Q |
1 |
tgatgtagagttttaattttttataagcttggatggatcaactccattggtatgagtttgagctagaagaataaaatcattcgcataatttagtaattaa |
100 |
Q |
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| T |
26128652 |
tgatgtagagtttttattttttataagcttggatggatcaactccattggtatgagtttgagctagaagaataaaatcatttgcataatttagaaattaa |
26128751 |
T |
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| Q |
101 |
ttccataaattataaccacatagatatttagcaaatcaacattcttttatccctgtttgccaattttctatattttttattgaaaaataaaagtttaggt |
200 |
Q |
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| T |
26128752 |
tcccataaattataaccacatacatatttagcaaatcaacattcttttatccctgtttgccaattttctatattttttattgaaaaataaaagtttaggt |
26128851 |
T |
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| Q |
201 |
gagttgtgtcttggtctgaaagccatttactaaatatgttatagttaaactatccgtcaaaagggaaggttatg |
274 |
Q |
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| T |
26128852 |
gagttgtgtctcggtctgaaagccatttactaaatatgttatagttaaactatccgccaaaagggaaggttatg |
26128925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 25577513 - 25577784
Alignment:
| Q |
1 |
tgatgtagagttttaattttttataagcttggatggatcaactccattggtatgagtttgagctagaagaataaaatcattcgcataatttagtaattaa |
100 |
Q |
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| T |
25577513 |
tgatgtagagtttttattttttataagcttggatggatcaactccattggtatgactttgagctagaagaataaaatcattcgcataatttagtaattaa |
25577612 |
T |
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| Q |
101 |
ttccataaattataaccacatagatatttagcaaatcaacattcttttatccctgtttgccaattttctatattttttattgaaaaataaaagtttaggt |
200 |
Q |
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| T |
25577613 |
tcccataaattataaccacatacatatttagcaaatcaacattcttttatccctgtttgccaattttctatattttttattgaaaaataaaagtttaggt |
25577712 |
T |
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| Q |
201 |
gagttgtgtcttggtctgaaagccatttactaaatatgttatagttaaactatccgtcaaaagggaaggtta |
272 |
Q |
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| T |
25577713 |
gagttgtgtctcggtctgaaagccatttaataaatatgttatagttaaactatccgccaaaagggaaggtta |
25577784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 33852008 - 33852288
Alignment:
| Q |
1 |
tgatgtagagttttaattttttataagcttggatggatcaactccattggtatgagtttgag--------ctagaagaataaaatcattcgcataattta |
92 |
Q |
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| T |
33852008 |
tgatgtagagttttcattttttataagcttggatggatcaactccattggtatgagtttgaggtatccagctagaagaataaaatcattcgcataattta |
33852107 |
T |
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| Q |
93 |
gtaattaattccataaattataaccacatagatatttagcaaatcaacattcttttatccctgtttgccaattttctata-ttttttattgaaaaataaa |
191 |
Q |
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| T |
33852108 |
gtaattaatcccataaattataaccacatacatatttagcaaatcaacattcttttatccctgtttgccaattttctatatttttttattgaaaaataaa |
33852207 |
T |
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| Q |
192 |
agtttaggtgagttgtgtcttggtctgaaagccatttactaaatatgttatagttaaactatccgtcaaaagggaaggtta |
272 |
Q |
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||||||||||||||| |||| |||||| |||||||||||||| | |||||||||||||||||||| ||||||||||||||| |
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| T |
33852208 |
agtttaggtgagttgggtctcggtctggaagccatttactaattgtgttatagttaaactatccgccaaaagggaaggtta |
33852288 |
T |
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