View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14754_low_9 (Length: 246)
Name: NF14754_low_9
Description: NF14754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14754_low_9 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13776 - 14003
Alignment:
| Q |
1 |
gaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagttaac |
100 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13776 |
gaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagttaac |
13875 |
T |
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| Q |
101 |
ctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaacct |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13876 |
ctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaactt |
13975 |
T |
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| Q |
201 |
cgtgacccttttaatcatgtctagtcct |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
13976 |
cgtgacccttttaatcatgtctagtcct |
14003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42932995 - 42932768
Alignment:
| Q |
1 |
gaagatggttcatctgttatggcatgtgtgaatgtagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagttaac |
100 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42932995 |
gaaggtggttcatctgttatggcatgtgtgaatgaagttagtgcagcaataaaactatgacttaagtatgatatgtgaagttggtgaaattagagttaac |
42932896 |
T |
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| Q |
101 |
ctggaacgttatctgttgtatgtgaagtggctttggcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaacct |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42932895 |
ctggaacgttatctgttgtatgtgaagtggctttgtcttctgggacatttaatttttgtatgatatgtgagattgaagctgatttccccagatacaactt |
42932796 |
T |
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| Q |
201 |
cgtgacccttttaatcatgtctagtcct |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42932795 |
cgtgacccttttaatcatgtctagtcct |
42932768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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