View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14755_high_11 (Length: 280)
Name: NF14755_high_11
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14755_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 37209130 - 37208865
Alignment:
| Q |
1 |
tcactctcaccttctaaacctttctcttctttatcactctcaacttcagtgggcccaggtttgaagataaaaagcccaggaccagacccagacacactaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37209130 |
tcactctcaccttctaaacctttctcttctttatcactctcaacttcagtgggcccaggtttgaagataaaaagcccaggaccagacccagacacactaa |
37209031 |
T |
|
| Q |
101 |
acaaccaatcatacacatcccaaaacacatgcacaggttgtttattaaccataacagtttggttccctctaaacttccactgcaaattcttaatatgaat |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37209030 |
acaaccaatcatatacatcccaaaacacatgcacaggttgtttattaaccataacagtttggttccctctaaacttccactgcaaattcttaatatgaat |
37208931 |
T |
|
| Q |
201 |
caaaacaatcccatcaatactaatccacatttcaggatctttgttgccagcagttgaactttcaac |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37208930 |
caaaacaatcccatcaatactaatccacatttcaggatctttgttgccagcagttgaactttcaac |
37208865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 52 - 239
Target Start/End: Complemental strand, 29504001 - 29503814
Alignment:
| Q |
52 |
ggcccaggtttgaagataaaaagcccaggaccagacccagacacactaaacaaccaatcatacacatcccaaaacacatgcacaggttgtttattaacca |
151 |
Q |
| |
|
||||| ||||| || || ||||| ||||| || || ||||| |||||||||||||||||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
29504001 |
ggccctggtttaaaaatgaaaagtccaggtcctgaaccagaaccactaaacaaccaatcatgaacatcccaaaaaacttgcacaggttgtttattaacca |
29503902 |
T |
|
| Q |
152 |
taacagtttggttccctctaaacttccactgcaaattcttaatatgaatcaaaacaatcccatcaatactaatccacatttcaggatc |
239 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
29503901 |
taacagtttgattccctctaaatttccactgcaaattcttaacatgaatcaaaacaattccatcaatgctaatccacatttcaggatc |
29503814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University