View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14755_high_12 (Length: 242)
Name: NF14755_high_12
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14755_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13648008 - 13648231
Alignment:
| Q |
1 |
tgagatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaa |
100 |
Q |
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| T |
13648008 |
tgagatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaa |
13648107 |
T |
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| Q |
101 |
gggactagtaaggaaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtgga |
200 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13648108 |
gggactcgtaaggaaaaaggtttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacataatgggtgga |
13648207 |
T |
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| Q |
201 |
attcaactttggaaagtgtggttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
13648208 |
attcaactttggaaagtgtggttt |
13648231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13658536 - 13658759
Alignment:
| Q |
1 |
tgagatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |
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| T |
13658536 |
tgagatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggactattgaaggagcttgaggaa |
13658635 |
T |
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| Q |
101 |
gggactagtaaggaaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtgga |
200 |
Q |
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| T |
13658636 |
gggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgcctttttgacacatagtggatgga |
13658735 |
T |
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| Q |
201 |
attcaactttggaaagtgtggttt |
224 |
Q |
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|||| |||||||| |||||||||| |
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| T |
13658736 |
attctactttggagagtgtggttt |
13658759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13653063 - 13653286
Alignment:
| Q |
1 |
tgagatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaa |
100 |
Q |
| |
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|||| ||||||||||||| ||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||| || || ||| || ||||||||| |
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| T |
13653063 |
tgagttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagactaataaaagaacttgaggaa |
13653162 |
T |
|
| Q |
101 |
gggactagtaaggaaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtgga |
200 |
Q |
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| T |
13653163 |
gggactagtaaggagaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacatagtggatgga |
13653262 |
T |
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| Q |
201 |
attcaactttggaaagtgtggttt |
224 |
Q |
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|||| |||||||| |||||||||| |
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| T |
13653263 |
attctactttggagagtgtggttt |
13653286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 26672241 - 26672162
Alignment:
| Q |
140 |
ccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaaagtgt |
219 |
Q |
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| T |
26672241 |
ccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgt |
26672162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 26943839 - 26943760
Alignment:
| Q |
140 |
ccacaagaggaagttttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaaagtgt |
219 |
Q |
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| T |
26943839 |
ccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgt |
26943760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 20156911 - 20156859
Alignment:
| Q |
155 |
ttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaac |
207 |
Q |
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| T |
20156911 |
ttgtcacataaagcaataggtgcatttttgacacattgtggatggaattcaac |
20156859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 27224227 - 27224168
Alignment:
| Q |
155 |
ttgtcacataaggcaattggtgcgtttttgacacataatgggtggaattcaactttggaa |
214 |
Q |
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||||||||||| ||||| ||||| |||||||||||| ||| ||||||||||| |||||| |
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| T |
27224227 |
ttgtcacataaagcaataggtgcatttttgacacattgtggttggaattcaacattggaa |
27224168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 31210024 - 31210072
Alignment:
| Q |
171 |
ttggtgcgtttttgacacataatgggtggaattcaactttggaaagtgt |
219 |
Q |
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||||||| |||| ||| |||||||| ||||||||||||||||| ||||| |
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| T |
31210024 |
ttggtgcattttggactcataatggttggaattcaactttggagagtgt |
31210072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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