View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14755_high_4 (Length: 392)
Name: NF14755_high_4
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14755_high_4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 31012786 - 31013163
Alignment:
| Q |
18 |
atactcttgaaagaatatccagaattaaagaattgcaaaagacatgttcaagttccagcaggggaaggctttcctctgtggcctttttatgatggtatag |
117 |
Q |
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| T |
31012786 |
atactcttgaaagaatatccagaattaaagaattgcaagagacatgttcaagttccagcaggggaaggctttcctctgtggcatttttatgatggtatag |
31012885 |
T |
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| Q |
118 |
ttgacattgataatcttaaaagtggtttgaataacgggtttgaggtgaattatagtgtgaaagaggaatgtgcaaagtgtttgggaagtgaag---gaga |
214 |
Q |
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| T |
31012886 |
ttgacattgataatcttaaaagtggtttgaataatgggtttgaggtgaattatagtgtgaaagaggaatgtgcaaagtgtttgggaagtgaagaaggaga |
31012985 |
T |
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| Q |
215 |
ttgtaaattgaagtccaatagggatattgagaaacatgttaactcctcttgctattatgataattgttcagatggatctattcatttttccacacaacaa |
314 |
Q |
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| T |
31012986 |
ttgtaaatggaagtccaatagggatattgagaaacatgttaactcctcttgctattatgataattgttcagatggatctattcatttttccacacaacaa |
31013085 |
T |
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| Q |
315 |
tgttctaatcacagtatgttttctatctctttatctcataacaaataaagtaggtttttgcggtaatcgtaacggtcg |
392 |
Q |
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| T |
31013086 |
tgttctaatcacagtatgttttctatctctttatctcataacaaataaagtaggtttttgcggtaatcgtaacggtcg |
31013163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 131 - 355
Target Start/End: Original strand, 30959082 - 30959313
Alignment:
| Q |
131 |
tcttaaaagtggtttgaataacgggtttgaggtgaattatagtgtgaaagaggaatgtgcaaagtgtttgggaagtgaagga---gattgtaaattgaag |
227 |
Q |
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| T |
30959082 |
tcttgaaaatggtttggataaggggtttgagttgaattatactatgaaagaggaatgctcaaggtgtttgggaagtgaaggaggagattgtaaatgggag |
30959181 |
T |
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| Q |
228 |
tccaatagggatattgagaaacatgttaactcctcttgctattatgataattgttcagatggatctattcatttttccacacaacaatgttctaatcac- |
326 |
Q |
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||||| ||||||||||||||||| || ||||| |||||||||||| |||||| |||||||||| || ||| |||||||||||| |||||||||||| |
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| T |
30959182 |
agcaataatgatattgagaaacatgtaaagtcctcgtgctattatgatgattgtttagatggatctgttgattcttccacacaacactgttctaatcaca |
30959281 |
T |
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| Q |
327 |
--agtatgttttc-tatctctttatctcataa |
355 |
Q |
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| T |
30959282 |
gaagtatgttttcttatctctttatctcataa |
30959313 |
T |
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