View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14755_high_7 (Length: 332)

Name: NF14755_high_7
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14755_high_7
NF14755_high_7
[»] chr1 (1 HSPs)
chr1 (17-327)||(31839815-31840118)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 31840118 - 31839815
Alignment:
Q  17 ttatatatgtacatgccacaaccaatatgttcattatgaaagcaaccttaatttggtggcagagctatacgacattcaccattcacgagatttcaaagtt 116  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31840118 ttatatatgtacatgccacaaccaatatgttcattatggaagcaaccttaatttggtggcagagctatacgacattcaccattcacgagatttgaaagtt 31840019  T
Q  117 acatac----aaaaacatcatgaaaattgaaaacccagtttcatcaattaatttcaattaaaatatcaaattctctnnnnnnnnntatgaataagtagga 212  Q
    ||||||    |||||||||||||||||||||||||||||||||          |||||||||||||||||||||||         |||||||||||||||    
T  31840018 acatacaattaaaaacatcatgaaaattgaaaacccagtttca----------tcaattaaaatatcaaattctct---aaaaaatatgaataagtagga 31839932  T
Q  213 attaggctcctaacaacaagaccgagatacaaataagactaaaagcctttatgaaagacaacatatatagttc--atagctatcaaccaatgttaaggca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||  |||||||||||||||||||||||||    
T  31839931 attaggctcctaacaacaagaccgagatacaaataagactaaaagcctctaagaaagacaacatatatagttcctatagctatcaaccaatgttaaggca 31839832  T
Q  311 aaagaagcaagaataat 327  Q
    |||||||||||||||||    
T  31839831 aaagaagcaagaataat 31839815  T

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