View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14755_high_8 (Length: 306)
Name: NF14755_high_8
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14755_high_8 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 5478571 - 5478869
Alignment:
| Q |
7 |
tcaaattcatgagtcatatcacagtgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgctttatttgcaaatgaatcagaaaacttca |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5478571 |
tcaaattcatgagtcagatcacagtgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgctttatttgcaaatgaatcagaaaacttca |
5478670 |
T |
|
| Q |
107 |
gcagttgaattatcattccacggtaaacctcctctgagaaagatagaacatatgatacaaaggtagattttctggagacgccatcgtttagttgacgctc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5478671 |
gcagttgaattatcattccacggtaaacctcctctgagaaagatagatcatatgatacaaaggtagattttctggagacgccatcgtatagttgacgctc |
5478770 |
T |
|
| Q |
207 |
attgggaaatagtattctaatagcaactcatacttgcaattttcatgttctgactatccttgttcacttgatctctaagaaaatgaaaccttaaatgaaa |
306 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5478771 |
attgggaaatagtattctaat-gcaactcatacttacaattttcatgttctgaccatccttgttcacttgatctctaagaaaatgaaaccttaaatgaaa |
5478869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 31402529 - 31402413
Alignment:
| Q |
7 |
tcaaattcatgagtcatatcaca--gtgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgctt-tatttgcaaatgaatcagaaaact |
103 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||||| ||||| ||||| |||| ||||||||| ||||||| ||| | |
|
|
| T |
31402529 |
tcaaattcatgaatcagatcacacagtgtctcgaacaagttgaggattttaaacatacgccatggtgaagggcttcgatttgcaaacgaatcagcaaaat |
31402430 |
T |
|
| Q |
104 |
tcagcagttgaattatc |
120 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
31402429 |
tcagaagttgaattatc |
31402413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 8040145 - 8040051
Alignment:
| Q |
26 |
cacagtgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgctt-tatttgcaaatgaatcagaaaacttcagcagttgaattat |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| |||| |||||| |||| ||||||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
8040145 |
cacagtgtctcgaacaagttaaggattttaaacatataccaggctgaatggcttcaatttgcaaacgaatcagcaaaaatcagcagttgaattat |
8040051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 8406081 - 8406138
Alignment:
| Q |
7 |
tcaaattcatgagtcatatcaca--gtgtctcgaacaagttgaggattttgaacatac |
62 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
8406081 |
tcaaattcatgagtcagatcacacagtgtctcgaacaagttgagaattttgaacatac |
8406138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 9137171 - 9137081
Alignment:
| Q |
31 |
tgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgcttt-atttgcaaatgaatcagaaaacttcagcagttgaattatc |
120 |
Q |
| |
|
|||| ||||||||| |||||||| |||||| ||| ||||||| | || |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
9137171 |
tgtcgcgaacaagtcaaggattttaaacatatgccaggctgaagggtttcgatttgcaaataaatcagaaaaattcagcagttgaattatc |
9137081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University