View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14755_low_11 (Length: 302)
Name: NF14755_low_11
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14755_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 4665522 - 4665231
Alignment:
| Q |
1 |
tgattttattagaattagatattagtcttggttgattgtgttcagtctaagactgagaagaccttagattgagtttgtttcgtagtttcaaaatttattc |
100 |
Q |
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| T |
4665522 |
tgattttattagaattagatattagtcttggttgattgtgtttggtcgaagactgagaagaccttagattgagtttgtttcgtagtttcaaaatttattc |
4665423 |
T |
|
| Q |
101 |
tcttggattacattctctaggaatattattcccaccaaagtgtttggtaaaatcttgatattcctaggaaagttggcaaggtgtgttttatttttcagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4665422 |
tcttggattacattctctaggaatattattcccaccaaagtgtttggtaaaatcttgatattcctaggaaagttggtaaggtgtgttttatttttcagaa |
4665323 |
T |
|
| Q |
201 |
taattaattttcgaaaacaattaatttttataaacttgtacggaatatgataatattatatttctaacctcatttttctagaactgtctgtg |
292 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4665322 |
taaataattttcgaaaacaattaatttttataaacttgtacggaatatgataatattatatttctaacctcatttttctagaaatgtctgtg |
4665231 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 41054350 - 41054400
Alignment:
| Q |
123 |
atattattcccaccaaagtgtttggtaaaatcttgatattcctaggaaagt |
173 |
Q |
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||||||||| || ||||||||||||||| ||||||| ||||||||||||| |
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| T |
41054350 |
atattattctcataaaagtgtttggtaaattcttgatgttcctaggaaagt |
41054400 |
T |
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