View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14755_low_13 (Length: 289)

Name: NF14755_low_13
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14755_low_13
NF14755_low_13
[»] chr5 (16 HSPs)
chr5 (18-285)||(23860879-23861146)
chr5 (18-285)||(23813946-23814213)
chr5 (29-285)||(23769496-23769755)
chr5 (29-285)||(23819344-23819603)
chr5 (17-285)||(23732097-23732364)
chr5 (27-199)||(23764199-23764371)
chr5 (30-285)||(23673677-23673932)
chr5 (123-285)||(23729330-23729492)
chr5 (131-285)||(23644474-23644628)
chr5 (25-146)||(23766854-23766975)
chr5 (25-146)||(23816702-23816823)
chr5 (79-155)||(11081805-11081881)
chr5 (87-136)||(20292995-20293044)
chr5 (87-136)||(20301443-20301492)
chr5 (87-136)||(20305856-20305905)
chr5 (87-136)||(20310260-20310309)
[»] chr3 (20 HSPs)
chr3 (85-155)||(4142117-4142187)
chr3 (45-155)||(3754558-3754668)
chr3 (85-145)||(4157937-4157997)
chr3 (31-146)||(956325-956440)
chr3 (44-150)||(2686300-2686409)
chr3 (85-143)||(2696727-2696785)
chr3 (85-146)||(1007459-1007520)
chr3 (85-146)||(1022487-1022548)
chr3 (85-150)||(3746006-3746071)
chr3 (76-156)||(989385-989465)
chr3 (87-138)||(37753345-37753396)
chr3 (61-143)||(803213-803295)
chr3 (87-149)||(2644351-2644413)
chr3 (87-149)||(2659141-2659203)
chr3 (87-149)||(7334228-7334290)
chr3 (85-150)||(2678387-2678452)
chr3 (87-136)||(13498224-13498273)
chr3 (87-143)||(2442039-2442095)
chr3 (75-139)||(2459263-2459327)
chr3 (99-147)||(44001607-44001655)
[»] chr4 (3 HSPs)
chr4 (75-143)||(20019767-20019835)
chr4 (75-143)||(20016180-20016249)
chr4 (33-160)||(22672105-22672232)
[»] chr1 (1 HSPs)
chr1 (86-155)||(51381438-51381507)
[»] chr2 (1 HSPs)
chr2 (87-139)||(36577366-36577418)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 23861146 - 23860879
Alignment:
Q  18 agagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatga 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861146 agagcaatagattcacgtactttgcacttgagtgttttcaggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatga 23861047  T
Q  118 aagcgtcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23861046 aagcgtcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaa 23860947  T
Q  218 ttctacaacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt 285  Q
     ||||||  || ||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||    
T  23860946 gtctacacaggattcgacccggaacttggttttttacaattctacaaatggctctgtaaagttttctt 23860879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 23814213 - 23813946
Alignment:
Q  18 agagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatga 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23814213 agagcaatagattcacttactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatga 23814114  T
Q  118 aagcgtcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaa 217  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23814113 cagcgtcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaa 23814014  T
Q  218 ttctacaacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt 285  Q
     |||||   || ||||| ||  | || |||||||||||||||||||||||||| ||||||||||||||    
T  23814013 gtctacgcaggattcgatccaaaacttggttttttacaattctataaatggctctgtaaagttttctt 23813946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 23769755 - 23769496
Alignment:
Q  29 ttcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttgg 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  23769755 ttcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcgtcttgg 23769656  T
Q  129 actaaattgttcactattcctttcatgccatcttatt---atttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattctacaa 225  Q
    ||||||||||||||||| |||||||||||||||||||   || |||||||||||| |||||||||||||||||||||||||||||||||||| |||||      
T  23769655 actaaattgttcactatacctttcatgccatcttattatcatctctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgc 23769556  T
Q  226 cggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt 285  Q
     || || |||||||| || |||||||||||||||||||||||||| ||||||||||||||    
T  23769555 aggatttgacccggaacttggttttttacaattctataaatggctctgtaaagttttctt 23769496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 285
Target Start/End: Complemental strand, 23819603 - 23819344
Alignment:
Q  29 ttcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttgg 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  23819603 ttcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttggattatgaaggaatatgggaataaagcgtcttgg 23819504  T
Q  129 actaaattgttcactattcctttcatgccatcttatt---atttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattctacaa 225  Q
    ||||||||||||||||| |||||||||||||||||||   || |||||||||||| |||||||||||||||||||||||||||||||||||| |||||      
T  23819503 actaaattgttcactatacctttcatgccatcttattatcatctctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacgc 23819404  T
Q  226 cggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt 285  Q
     || || |||||||| || |||||||||||||||||||||||||| ||||||||||||||    
T  23819403 aggatttgacccggaacttggttttttacaattctataaatggctctgtaaagttttctt 23819344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 23732097 - 23732364
Alignment:
Q  17 aagagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatg 116  Q
    |||| ||||||||||| || |||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||      
T  23732097 aagaacaatagattcatgttctttccacttgagtgttttcaggaattgtttgtggtggatttctagtaatgatgtttggattatgaaggaatatgggaat 23732196  T
Q  117 aaagcgtcttggactaaattgttcactattccttt-catgccatcttattatttctttgccaatggaatgcat-atttttgaggatggcctagtgacgtg 214  Q
    ||||||||||||| |||| |||||||||||||||| |||||||   ||||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  23732197 aaagcgtcttggaataaactgttcactattcctttccatgcca---tattatttctttgccaatgtaatgcataaattttgaggatggcctagtgacgtg 23732293  T
Q  215 gaattctacaacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt 285  Q
    ||| ||||||  || ||||||||||| || ||||||||||||||||| |||||||| ||| ||||||||||    
T  23732294 gaagtctacacaggattcgacccggaacttggttttttacaattctacaaatggctctgttaagttttctt 23732364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 23764371 - 23764199
Alignment:
Q  27 gattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtctt 126  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23764371 gattcacgtactttgcacttgattgttttccggaattgtttgtgctggatttgtagtaatgatgtttggataatgaaggaatatgggatgaaagcgtctt 23764272  T
Q  127 ggactaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgagga 199  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| | |||| ||||| || |||||||||    
T  23764271 ggactacattgttcactattcctttcatgccatcttattatttcttttctaatgaaatgcttaattttgagga 23764199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 30 - 285
Target Start/End: Original strand, 23673677 - 23673932
Alignment:
Q  30 tcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttgga 129  Q
    ||||| ||||||| | |||||||| || | || ||||| || ||||| |||||||||||||||||||||||||||||| ||  || |||| | || |||     
T  23673677 tcacgaactttgctcctgagtgttgtcagcaagtgtttttggtggatgtctagtaatgatgtttggataatgaaggaagattagaagaaaacatcgtggt 23673776  T
Q  130 ctaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattctacaacggt 229  Q
    ||||||||||| | ||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  ||     
T  23673777 ctaaattgttcgccattcctttcctcccatcctattatttctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacacagga 23673876  T
Q  230 ttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt 285  Q
    ||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||    
T  23673877 ttcgacccggaacttggttttttacaattctacaaatggctctgtaaagttttctt 23673932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 123 - 285
Target Start/End: Original strand, 23729330 - 23729492
Alignment:
Q  123 tcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattcta 222  Q
    ||||||||||||||| |||||| ||||||||  |||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||||| ||||    
T  23729330 tcttggactaaattgctcactactcctttcaacccatcttattatctctttgccattgtaatgcataattttgaggatggcctagtgacgtggaagtcta 23729429  T
Q  223 caacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt 285  Q
    ||  || ||||||||||| || ||||||||||||||||| |||||||| ||| ||||||||||    
T  23729430 cacaggattcgacccggaacttggttttttacaattctacaaatggctctgttaagttttctt 23729492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 131 - 285
Target Start/End: Original strand, 23644474 - 23644628
Alignment:
Q  131 taaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattctacaacggtt 230  Q
    |||||||||| | ||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  || |    
T  23644474 taaattgttctccattactctcatcccatcttattatttctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacacaggat 23644573  T
Q  231 tcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt 285  Q
    |||| ||||| || ||||||||||||||||| |||||||| ||| ||||||||||    
T  23644574 tcgatccggaacttggttttttacaattctacaaatggctctgttaagttttctt 23644628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 23766975 - 23766854
Alignment:
Q  25 tagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtc 124  Q
    ||||||| | |||||||||||||||| ||| | ||||||||||||||    ||||| |||||||||||||||| ||||| |||||||| |  |||| |||    
T  23766975 tagattcgcatactttgcacttgagtttttgcaggaattgtttgtgcctcgtttctggtaatgatgtttggattatgaaagaatatggaaataaagagtc 23766876  T
Q  125 ttggactaaattgttcactatt 146  Q
    ||||||||||||||||||||||    
T  23766875 ttggactaaattgttcactatt 23766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 23816823 - 23816702
Alignment:
Q  25 tagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtc 124  Q
    ||||||| | |||||||||||||||| ||| | ||||||||||||||    ||||| |||||||||||||||| ||||| |||||||| |  |||| |||    
T  23816823 tagattcgcatactttgcacttgagtttttgcaggaattgtttgtgcctcgtttctggtaatgatgtttggattatgaaagaatatggaaataaagagtc 23816724  T
Q  125 ttggactaaattgttcactatt 146  Q
    ||||||||||||||||||||||    
T  23816723 ttggactaaattgttcactatt 23816702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 11081805 - 11081881
Alignment:
Q  79 ctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 155  Q
    ||||| ||||||||||| | |||||||| ||||| |  |||| |||||||||||||||||| |||||||||| ||||    
T  11081805 ctagtgatgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtttactattccttacatg 11081881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  87 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 136  Q
    ||||||||||| |||||||||||||| || |||| |||||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 20301443 - 20301492
Alignment:
Q  87 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 136  Q
    ||||||||||| |||||||||||||  || |||| |||||||||||||||    
T  20301443 gatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 20305856 - 20305905
Alignment:
Q  87 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 136  Q
    ||||| ||||| |||||||||||||| || |||| |||||||||||||||    
T  20305856 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 20310260 - 20310309
Alignment:
Q  87 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 136  Q
    ||||| ||||| |||||||||||||| || |||| |||||||||||||||    
T  20310260 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 4142187 - 4142117
Alignment:
Q  85 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 155  Q
    ||||||||||| | |||||||||||||| |  |||| ||||||||||||||||||||||||||||| ||||    
T  4142187 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 4142117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 3754558 - 3754668
Alignment:
Q  45 ttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcacta 144  Q
    |||||||||||  || |||| ||||||  || |||| ||  |||||||||| | |||||||||||||| |  |||| |||||||||||||||||| ||||    
T  3754558 ttgagtgttttgagggattgcttgtgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttacta 3754657  T
Q  145 ttcctttcatg 155  Q
    |||||| ||||    
T  3754658 ttccttgcatg 3754668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 4157997 - 4157937
Alignment:
Q  85 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactat 145  Q
    ||||||||||| | |||||||||||||| |  |||| ||||||||||||||||||||||||    
T  4157997 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactat 4157937  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 956325 - 956440
Alignment:
Q  31 cacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggac 130  Q
    ||||| ||||| |||||||||||||| || |||| ||||||  ||||| | ||   ||||||||||| |||||||||||||| |  |||| |||||||      
T  956325 cacgttctttgaacttgagtgttttcagggattgcttgtgcatgatttttggttgcgatgtttggattatgaaggaatatggaaaaaaagagtcttggca 956424  T
Q  131 taaattgttcactatt 146  Q
    ||||||||||| ||||    
T  956425 taaattgttcattatt 956440  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 2686409 - 2686300
Alignment:
Q  44 cttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttgg---ataatgaaggaatatgggatgaaagcgtcttggactaaattgttc 140  Q
    |||| |||||||  || |||||||||||| ||| | | || |||||||||||   || |||||||||||||| |  |||| |||||||| ||||||||||    
T  2686409 cttgggtgttttgagggattgtttgtgcttgatctgtggtgatgatgtttgggttattatgaaggaatatggaaaaaaagagtcttggaataaattgttc 2686310  T
Q  141 actattcctt 150  Q
    ||||||||||    
T  2686309 actattcctt 2686300  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 2696785 - 2696727
Alignment:
Q  85 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 143  Q
    ||||||||||||| |||||||||||||| |  |||| |||||||| |||||||||||||    
T  2696785 atgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 1007459 - 1007520
Alignment:
Q  85 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactatt 146  Q
    ||||||||||| |||||||||||||||| |  || | ||| |||||||||||||||||||||    
T  1007459 atgatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatt 1007520  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 1022487 - 1022548
Alignment:
Q  85 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactatt 146  Q
    ||||||||||| |||||||||||||||| |  || | ||| |||||||||||||||||||||    
T  1022487 atgatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcactatt 1022548  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 3746006 - 3746071
Alignment:
Q  85 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctt 150  Q
    ||||| ||||||| |||||||||||||  | | ||| |||||||||||||||||| ||||||||||    
T  3746006 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 3746071  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 989385 - 989465
Alignment:
Q  76 tttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatgc 156  Q
    ||||| || ||||||||||| ||||||| || || || |  |||| ||||||||||||||||||||||||| ||| |||||    
T  989385 tttctggtgatgatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttcttacatgc 989465  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 37753396 - 37753345
Alignment:
Q  87 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgt 138  Q
    ||||||||||| ||| |||||||||| | ||||| |||||||||||||||||    
T  37753396 gatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 803295 - 803213
Alignment:
Q  61 attgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 143  Q
    |||| ||||||  ||||||| || ||||||||||| | ||||| |||||||| |  |||| |||||||||||| |||||||||    
T  803295 attgcttgtgcatgatttctggtgatgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 2644413 - 2644351
Alignment:
Q  87 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcct 149  Q
    ||||||||||| |||||||| ||||| |   ||| ||||||||||||||||| ||||||||||    
T  2644413 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2644351  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 2659203 - 2659141
Alignment:
Q  87 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcct 149  Q
    ||||||||||| |||||||| ||||| |   ||| ||||||||||||||||| ||||||||||    
T  2659203 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2659141  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 7334290 - 7334228
Alignment:
Q  87 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcct 149  Q
    ||||||||||| |||||||| || || |  |||| ||||||||||||||||| ||||||||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacactattcct 7334228  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 2678452 - 2678387
Alignment:
Q  85 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctt 150  Q
    ||||||||||| | |||||  ||||||| |  |||| ||| |||||||||||||||||||||||||    
T  2678452 atgatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcactattcctt 2678387  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  87 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 136  Q
    ||||||||||| |||||||||||||| |  |||| |||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 2442039 - 2442095
Alignment:
Q  87 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 143  Q
    ||||||||||| |||||||| ||||| |  ||||  |||||||||||||||||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 2442095  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 2459263 - 2459327
Alignment:
Q  75 atttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgtt 139  Q
    |||||| || ||| ||||||||| |||||||||||||| |  |||| ||||||||| ||||||||    
T  2459263 atttctggtcatgttgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtt 2459327  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 44001607 - 44001655
Alignment:
Q  99 atgaaggaatatgggatgaaagcgtcttggactaaattgttcactattc 147  Q
    |||||||||||||| || |||| ||||||||||||| ||| ||||||||    
T  44001607 atgaaggaatatggaattaaagagtcttggactaaactgtacactattc 44001655  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 20019835 - 20019767
Alignment:
Q  75 atttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 143  Q
    |||||| |||||||||||||| | |||||||||||||| ||  ||| ||||||||||||||||||||||    
T  20019835 atttctggtaatgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20019767  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 20016249 - 20016180
Alignment:
Q  75 atttctagtaatgatgttt-ggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 143  Q
    |||||| |||||||||||| |||| |||||||||||||| ||  ||| ||||||||||||||||||||||    
T  20016249 atttctggtaatgatgttttggatcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 22672232 - 22672105
Alignment:
Q  33 cgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggacta 132  Q
    |||| ||||| |||||||||| || || |||| |||  || | ||||| || | || |||||| |||||||||||||||| |  || |  ||||||||||    
T  22672232 cgtattttgctcttgagtgttctcagggattgcttgatcttgttttctggtgacgacgtttgggtaatgaaggaatatggaaataaggaatcttggacta 22672133  T
Q  133 aattgttcactattcctttcatgccatc 160  Q
    |||||||||||||| ||| |||||||||    
T  22672132 aattgttcactatttcttacatgccatc 22672105  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 51381507 - 51381438
Alignment:
Q  86 tgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 155  Q
    |||| ||||||| ||||| |||||||| |   ||| |||||||||||||||||||| |||||||| ||||    
T  51381507 tgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 36577366 - 36577418
Alignment:
Q  87 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgtt 139  Q
    ||||||||||| |||||||||||||| |  |||| |||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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