View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14755_low_16 (Length: 241)
Name: NF14755_low_16
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14755_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 39996666 - 39996896
Alignment:
| Q |
1 |
aggtgaaaagtcacctagttcggataatgttaacgaggattgtgcttcgatgaattgaacacccaatgagttgcattcaagatcaaaacgaccatttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39996666 |
aggtgaaaagtcacctagttcggataatgttaacgaggattgtgcttcgatgaattgaacacccaatgagttgcattcgagatcaaaacgaccatttcct |
39996765 |
T |
|
| Q |
101 |
ttcgagtgtaaacgaccggcaagtggataaaacggcacaaggactttgcttaatgactctttcaaagtggtggcgattttagtgggggagggaagccagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39996766 |
ttcgagtgtaaacgaccggcaagtggataaaacggcacaaggactttgcttaatgactctttcaaagtggtggcgattttagtgggggaggtaagccagt |
39996865 |
T |
|
| Q |
201 |
tttttgggggctggtaaaagtatattattgg |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
39996866 |
tttttgggggctggtaaaagtatattgttgg |
39996896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53036929 - 53036708
Alignment:
| Q |
1 |
aggtgaaaagtcacctagttcggataatgttaacgaggattgtgcttcgatgaattgaacacccaatgagttgcattcaagatcaaaacgaccatttcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||||||||||| | |||||||||||| || || |
|
|
| T |
53036929 |
aggtgaaaagtcacctagttcggataaggttaacgacgattctgcttcgatgaattgagcacccaatgagttgcattcgacatcaaaacgaccgctttct |
53036830 |
T |
|
| Q |
101 |
ttcgagtgtaaacgaccggcaagtggataaaacggcacaaggactttgcttaatgactctttcaaagtggtggcgattttagtgggggagggaagccagt |
200 |
Q |
| |
|
||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||| | |
|
|
| T |
53036829 |
ttccattgtaaacgaccggctagtggataaaacggcacaaggactttgctcaatgagtctttcaaagtggtggcgattttattgggggaggtaagccatt |
53036730 |
T |
|
| Q |
201 |
tttttgggggctggtaaaagta |
222 |
Q |
| |
|
||| |||||| |||||||||| |
|
|
| T |
53036729 |
tttgtggggggcggtaaaagta |
53036708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University