View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14755_low_19 (Length: 237)
Name: NF14755_low_19
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14755_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 43181013 - 43180803
Alignment:
| Q |
10 |
agaacctgtggattgtgacactgaagtgaatcaaggatgcaatggcgggttaatggaatatgcattcgagttcatcaagcaaaatggcataacaacagaa |
109 |
Q |
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| T |
43181013 |
agaacttgtggattgtgacactgaagtgaatcaaggatgcaatggcgggttaatggaatatgcattcgagttcatcaagcaaaatggcataacaacagaa |
43180914 |
T |
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| Q |
110 |
accaattatccttatgctgcaaaagatggaacctgtaatatacaaaaggtgcacacactagtctatttataattagtacctaatatataattaataaatt |
209 |
Q |
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| T |
43180913 |
accaattatccttatgctgcaaaagatggaacctgtaatatacaaaaggtgcacacactagtctatttataattagtacctaatatataattaataaatt |
43180814 |
T |
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| Q |
210 |
ttaatttgatt |
220 |
Q |
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||||||||||| |
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| T |
43180813 |
ttaatttgatt |
43180803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 34312081 - 34311975
Alignment:
| Q |
20 |
gattgtgacactgaagtgaatcaaggatgcaatggcgggttaatggaatatgcattcgagttcatcaagcaaaa---tggcataacaacagaaaccaatt |
116 |
Q |
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|||||||||| | ||| ||||||||||||||||| ||| ||||||||||||| || |||| |||||||||||| ||||||||||||||||| | ||| |
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| T |
34312081 |
gattgtgacaatcaagaaaatcaaggatgcaatggtgggctaatggaatatgcttttgagtacatcaagcaaaaaggtggcataacaacagaaagctatt |
34311982 |
T |
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| Q |
117 |
atcctta |
123 |
Q |
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| T |
34311981 |
accctta |
34311975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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