View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14755_low_3 (Length: 397)
Name: NF14755_low_3
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14755_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 14201449 - 14201086
Alignment:
| Q |
18 |
tagctatggtggcaaaatcctcccccgttacccggatggcaaactccgttacctcggtggccataatcgcgttctctccgttgatcgctctatacaattc |
117 |
Q |
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| T |
14201449 |
tagctatggtggcaaaatcctcccccgttacccggatggcaaactccgttacctcggtggccataatcgcgttctctccgttgatcgctctatacaattc |
14201350 |
T |
|
| Q |
118 |
tccggtcagtattattagatgtaatagttagttacaataattagttcaatttgaaattgattttgaagctgtttttgttacagaactgttattgaagctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14201349 |
tccggtcagtattattagatgtaatagttagttacaataattagttcaatttgaaattgattttgaagctgtttttgttacagaactgttattgaagctg |
14201250 |
T |
|
| Q |
218 |
aaagagctctgcagttcatccgtaacgcaacttcgctgtcagttacccgctgaagacctcgacgctttggtttccatcacctccgacgaagatctcatca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14201249 |
aaagagctctgcagttcatccgtaacgcaacttcgctgtcagttacctgctgaagacctcgacgctttggtttccatcacctccgacgaagatctcatca |
14201150 |
T |
|
| Q |
318 |
atctaatcgaagaatatgatcgtactgcatcaccacaatcacagttaaagatcaaagccttcat |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14201149 |
atctaatcgaagaatatgatcgtactgcatcaccacaatcacagttaaagatcaaagccttcat |
14201086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 37701816 - 37701778
Alignment:
| Q |
125 |
agtattattagatgtaatagttagttacaataattagtt |
163 |
Q |
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| T |
37701816 |
agtattattagttgtaatagttagttacaataattagtt |
37701778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 29051289 - 29051322
Alignment:
| Q |
130 |
tattagatgtaatagttagttacaataattagtt |
163 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
29051289 |
tattagatgtaatagttagttacaataattagtt |
29051322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 3997280 - 3997247
Alignment:
| Q |
130 |
tattagatgtaatagttagttacaataattagtt |
163 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
3997280 |
tattagatgtaacagttagttacaataattagtt |
3997247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 37864101 - 37864134
Alignment:
| Q |
130 |
tattagatgtaatagttagttacaataattagtt |
163 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
37864101 |
tattagatgtaatagttggttacaataattagtt |
37864134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 3320660 - 3320688
Alignment:
| Q |
134 |
agatgtaatagttagttacaataattagt |
162 |
Q |
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| T |
3320660 |
agatgtaatagttagttacaataattagt |
3320688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 42603706 - 42603678
Alignment:
| Q |
129 |
ttattagatgtaatagttagttacaataa |
157 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42603706 |
ttattagatgtaatagttagttacaataa |
42603678 |
T |
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