View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14755_low_6 (Length: 382)

Name: NF14755_low_6
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14755_low_6
NF14755_low_6
[»] chr6 (10 HSPs)
chr6 (41-371)||(2435854-2436184)
chr6 (42-371)||(2571437-2571766)
chr6 (46-371)||(2674928-2675253)
chr6 (42-352)||(2589685-2589995)
chr6 (42-371)||(2621252-2621581)
chr6 (42-366)||(2449034-2449358)
chr6 (42-273)||(2598288-2598519)
chr6 (42-328)||(2643122-2643408)
chr6 (51-170)||(3431173-3431292)
chr6 (84-182)||(33788351-33788449)
[»] chr8 (1 HSPs)
chr8 (87-208)||(27731253-27731374)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 41 - 371
Target Start/End: Original strand, 2435854 - 2436184
Alignment:
Q  41 cttactactacaggttggggagaggggaattcaaatgtctgggggacaaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattcta 140  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2435854 cttattactacaggttggggagaggggaattcaaatgtctgggggacaaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattcta 2435953  T
Q  141 ttgctagacgaagcaacaagtgctctcgattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2435954 ttgctagacgaagcaacaagtgctctcgattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcg 2436053  T
Q  241 ctcaccgcttatccaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatga 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2436054 ctcaccgcttatccaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctcatgcaaaatga 2436153  T
Q  341 cagttccatttacacatccctagttcatctc 371  Q
    |||||||||||||||||||||||||||||||    
T  2436154 cagttccatttacacatccctagttcatctc 2436184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 42 - 371
Target Start/End: Complemental strand, 2571766 - 2571437
Alignment:
Q  42 ttactactacaggttggggagaggggaattcaaatgtctgggggacaaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattctat 141  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||||    
T  2571766 ttactactacaggttggggagaggggagttcaaatgtcagggggacaaaagcaaagaattgcaattgcaagagccatcataaaaatgccaaaaattctat 2571667  T
Q  142 tgctagacgaagcaacaagtgctctcgattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgc 241  Q
    || ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  2571666 tgttagacgaagcaacaagtgcactcgattctgaatccgaacgagtcgtccaagaagctctagacaaagctgcagttggacgaaccaccatcatcatcgc 2571567  T
Q  242 tcaccgcttatccaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatgac 341  Q
    |||||||||||| |||||||||||||||||||| ||||| || ||||||||||||  | |||||||||  ||||||||||| ||||| ||||||||||||    
T  2571566 tcaccgcttatctaccatccaaaatgcagacattattgcggtcgttcaaaatggtctggtcatggaaatgggatctcacgatagcctcatgcaaaatgac 2571467  T
Q  342 agttccatttacacatccctagttcatctc 371  Q
    | |||  ||||||||||||| |||| ||||    
T  2571466 aattctctttacacatcccttgttcgtctc 2571437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 46 - 371
Target Start/End: Complemental strand, 2675253 - 2674928
Alignment:
Q  46 tactacaggttggggagaggggaattcaaatgtctgggggacaaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattctattgct 145  Q
    ||||||||||||||||||| ||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| |||| ||    
T  2675253 tactacaggttggggagagaggagttcagatgtcagggggacaaaaacaaaggattgccattgcaagagccataataaaaatgcctaaaattttattact 2675154  T
Q  146 agacgaagcaacaagtgctctcgattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgctcac 245  Q
    ||| |||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| |  ||||||||||||||||||||||||||||||    
T  2675153 agatgaagcaacaagtgcacttgattctgaatccgaacgagttgttcaagaagctctagacaaagcggcggttggacgcaccaccatcatcatcgctcac 2675054  T
Q  246 cgcttatccaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatgacagtt 345  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||    
T  2675053 cgcttatcaaccatccaaaatgcagacatcattgcagttgtccaaaatggtaagatcatggaaacgggatctcacgaaagcctcatgcaaaatgaaaatt 2674954  T
Q  346 ccatttacacatccctagttcatctc 371  Q
    |  ||||||| ||||| |||| ||||    
T  2674953 ctctttacacctccctcgttcgtctc 2674928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 42 - 352
Target Start/End: Original strand, 2589685 - 2589995
Alignment:
Q  42 ttactactacaggttggggagaggggaattcaaatgtctgggggacaaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattctat 141  Q
    ||||||||||||||| | ||||| ||| | |||||||| ||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  2589685 ttactactacaggttagagagagaggagtacaaatgtcaggggggcaaaagcaaaggattgccattgcaagagctatcataaaaatgccaaaaattctat 2589784  T
Q  142 tgctagacgaagcaacaagtgctctcgattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgc 241  Q
    ||||||| |||||||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  2589785 tgctagatgaagcaacaagtgcactcgattctgaatcagaaagggttgtccaagaagctctagacaaagctaccgttggacgcaccaccatcatcatcgc 2589884  T
Q  242 tcaccgcttatccaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatgac 341  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||| |||||    
T  2589885 tcaccgcctatctaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagattatggaaataggatctcacgaaagcctcgtgcaagatgac 2589984  T
Q  342 agttccattta 352  Q
    | ||| |||||    
T  2589985 aattcaattta 2589995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 42 - 371
Target Start/End: Original strand, 2621252 - 2621581
Alignment:
Q  42 ttactactacaggttggggagaggggaattcaaatgtctgggggacaaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattctat 141  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||| ||  ||||||||||||||||||| |    
T  2621252 ttactactgcaggttggggagagaggagttcaaatgtctggggggcaaaagcaaaggatttccattgcaagagctatcataaaaatgccaaaaattcttt 2621351  T
Q  142 tgctagacgaagcaacaagtgctctcgattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgc 241  Q
    ||||||| |||||||||||||| || ||||||||||| ||| ||||||||||||||||| ||||||||||    ||||||||||||||||||||||||||    
T  2621352 tgctagatgaagcaacaagtgcactagattctgaatccgaaagagttgtccaagaagctttagacaaagccaccgttggacgcaccaccatcatcatcgc 2621451  T
Q  242 tcaccgcttatccaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatgac 341  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||  ||||||||||||||| |||||||| ||||||||||||    
T  2621452 tcaccgcttatccaccattcaaaatgcagacatcattgcggttgttcaaaatggtatgatcgcggaaacaggatctcatgaaagcctcatgcaaaatgac 2621551  T
Q  342 agttccatttacacatccctagttcatctc 371  Q
    | |||  ||||| | ||||| |||| ||||    
T  2621552 aattctctttacgcctcccttgttcgtctc 2621581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 42 - 366
Target Start/End: Original strand, 2449034 - 2449358
Alignment:
Q  42 ttactactacaggttggggagaggggaattcaaatgtctgggggacaaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattctat 141  Q
    ||||||||| ||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||  |||| ||||||||    
T  2449034 ttactactataggttggggagaggggagtacaaatgtcagggggacaaaagcaaaggatttccattgcaagagccataatcaaaaatccaagaattctat 2449133  T
Q  142 tgctagacgaagcaacaagtgctctcgattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgc 241  Q
    |||||||||||||||||||||| || |||| |||||| ||||||||||||||||||||| | || |||||   ||||| |||||||||||| ||||||||    
T  2449134 tgctagacgaagcaacaagtgcactagattttgaatccgaacgagttgtccaagaagcttttgagaaagccacagttgaacgcaccaccattatcatcgc 2449233  T
Q  242 tcaccgcttatccaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcctgatgcaaaatgac 341  Q
    |||||||||||||||||||  || |||||| ||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  2449234 tcaccgcttatccaccatcagaactgcagatatcattgcaatcgttcaaaatggtaagatcgtggaaacaggatctcacgaaagccttatgcaaaatgac 2449333  T
Q  342 agttccatttacacatccctagttc 366  Q
    || ||  ||||||| ||||| ||||    
T  2449334 agctctctttacacctccctcgttc 2449358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 42 - 273
Target Start/End: Complemental strand, 2598519 - 2598288
Alignment:
Q  42 ttactactacaggttggggagaggggaattcaaatgtctgggggacaaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattctat 141  Q
    ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| ||||||||||||||  |||||||||||||||||||||    
T  2598519 ttactactacaggttggggagaggggagtacaaatgtcagggggacaaaagcaaagaattgcaattgcaagagccatcataaaaatgccaaaaattctat 2598420  T
Q  142 tgctagacgaagcaacaagtgctctcgattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgc 241  Q
    || ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  2598419 tgttagacgaagcaacaagtgcactcgattctgaatccgaacgagtcgtccaagaagctctagacaaagcttcagttggacgcaccaccatcatcatcgc 2598320  T
Q  242 tcaccgcttatccaccatccaaaatgcagaca 273  Q
    |||||| ||||| |||||||||||||||||||    
T  2598319 tcaccgattatctaccatccaaaatgcagaca 2598288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 42 - 328
Target Start/End: Complemental strand, 2643408 - 2643122
Alignment:
Q  42 ttactactacaggttggggagaggggaattcaaatgtctgggggacaaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattctat 141  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||| |||    
T  2643408 ttactactacaggttggggagagaggagttcaaatgtcaggggggcaaaaacaaaggattgccattgcaagagccataataaaaatgcctaaaattttat 2643309  T
Q  142 tgctagacgaagcaacaagtgctctcgattctgaatctgaacgagttgtccaagaagctctagacaaagctgtagttggacgcaccaccatcatcatcgc 241  Q
    || | |||||||| |||||||| || ||||||||||| |||||| |||||||||| |||||||||||||  | |||||||||||| ||||||||||||||    
T  2643308 tgttggacgaagcgacaagtgcacttgattctgaatccgaacgaattgtccaagacgctctagacaaagtcgcagttggacgcacaaccatcatcatcgc 2643209  T
Q  242 tcaccgcttatccaccatccaaaatgcagacatcattgcagttgttcaaaatggtaagatcatggaaacaggatctcacgaaagcct 328  Q
    ||| ||| ||||||||||||||||||| ||||||||||||||  |||||||||| ||||| |||||||||||| |||| ||||||||    
T  2643208 tcatcgcctatccaccatccaaaatgctgacatcattgcagtgtttcaaaatggcaagataatggaaacaggaactcatgaaagcct 2643122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 170
Target Start/End: Complemental strand, 3431292 - 3431173
Alignment:
Q  51 caggttggggagaggggaattcaaatgtctgggggacaaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattctattgctagacg 150  Q
    |||||||| ||| | ||| ||||| | ||||| |||||||||||||||||||| ||||||||||| ||  | ||||  ||||| || ||  |  ||||||    
T  3431292 caggttggtgagcgaggagttcaattatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaatccaaagatccttctcttagacg 3431193  T
Q  151 aagcaacaagtgctctcgat 170  Q
    ||||||| ||||||||||||    
T  3431192 aagcaactagtgctctcgat 3431173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 33788449 - 33788351
Alignment:
Q  84 ggacaaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattctattgctagacgaagcaacaagtgctctcgattctgaatctgaa 182  Q
    |||||||||||||| || |||||||||||||| ||  ||||||  |||  ||||||  |||| || |||||||| ||||| || || ||||||||||||    
T  33788449 ggacaaaagcaaagaatagccattgcaagagctatcataaaaaatccagtaattcttctgcttgatgaagcaactagtgcacttgactctgaatctgaa 33788351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 27731253 - 27731374
Alignment:
Q  87 caaaagcaaaggattgccattgcaagagccatagtaaaaatgccaaaaattctattgctagacgaagcaacaagtgctctcgattctgaatctgaacgag 186  Q
    |||||||||||| | |||||||||||||| ||  ||| ||  || |||||  ||||||| || |||||||||||||| || |||   ||||| ||||| |    
T  27731253 caaaagcaaagggtggccattgcaagagctattttaagaaaccctaaaatattattgcttgatgaagcaacaagtgcactagatgtcgaatcggaacgtg 27731352  T
Q  187 ttgtccaagaagctctagacaa 208  Q
    |||| ||| ||||| |||||||    
T  27731353 ttgtacaacaagctttagacaa 27731374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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