View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14755_low_7 (Length: 342)
Name: NF14755_low_7
Description: NF14755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14755_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 27836227 - 27836392
Alignment:
| Q |
14 |
cataggtacaagattggcaatgttacgtatcataaagacttcaccaggttggaatcctaatatgttagaggggcatacccttgaatctgcacaagcaatt |
113 |
Q |
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| T |
27836227 |
cataggcacaagattggcaatgttacgtatcataaagacttcaccaggttggaatcctaatatgttagaggggcacacccttgaatctgcacaagcaatt |
27836326 |
T |
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| Q |
114 |
accataaactgtacttggaattattagttattagaacaa-taaagtctcagtttaattaaaatatg |
178 |
Q |
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| T |
27836327 |
accataaactgtacttggatttattagttattagaacaattaaagtctcagtttaattaaaatatg |
27836392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 182 - 326
Target Start/End: Original strand, 27836429 - 27836572
Alignment:
| Q |
182 |
caaaatgtgttgttgtggagattatttgtgaaaatgatttgatagtatagggnnnnnnnttgaataaatggacttctgaaatctatttgttaatcacctt |
281 |
Q |
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| T |
27836429 |
caaaatgtgt-gttgtggagattatttgtgaagatgatttgatagtatagggaaaaaaattgaataaatggacttctgaaatctatttgttaatcacctt |
27836527 |
T |
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| Q |
282 |
tggatattgagcttcagcaagagattcataatgctccaactcttt |
326 |
Q |
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| T |
27836528 |
tggatattgagcttcagcaagagattcataatggtccaactcttt |
27836572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 1939582 - 1939655
Alignment:
| Q |
60 |
ggttggaatcctaatatgttagaggggcatacccttgaatctgcacaagcaattaccataaactgtacttggaa |
133 |
Q |
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| T |
1939582 |
ggttgaaatcccaaaatattggaggggcataccctggaatctgcacaggcaataaccatgaactgttcttggaa |
1939655 |
T |
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