View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14756_high_2 (Length: 449)

Name: NF14756_high_2
Description: NF14756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14756_high_2
NF14756_high_2
[»] chr7 (8 HSPs)
chr7 (41-152)||(38142112-38142224)
chr7 (42-151)||(19324098-19324208)
chr7 (16-152)||(15669564-15669701)
chr7 (41-149)||(29626789-29626898)
chr7 (16-152)||(32575342-32575478)
chr7 (35-152)||(29125968-29126086)
chr7 (16-152)||(18299540-18299676)
chr7 (77-117)||(17194037-17194077)
[»] chr6 (2 HSPs)
chr6 (41-152)||(7093795-7093907)
chr6 (61-149)||(24795240-24795329)
[»] chr4 (3 HSPs)
chr4 (16-152)||(30598324-30598461)
chr4 (41-152)||(40345902-40346014)
chr4 (16-152)||(50771678-50771815)
[»] chr1 (1 HSPs)
chr1 (41-152)||(15759830-15759942)
[»] scaffold0432 (1 HSPs)
scaffold0432 (16-152)||(8973-9109)
[»] chr5 (2 HSPs)
chr5 (16-152)||(25982273-25982409)
chr5 (16-152)||(40973366-40973502)
[»] chr3 (3 HSPs)
chr3 (16-152)||(53459001-53459138)
chr3 (46-146)||(26900438-26900539)
chr3 (57-152)||(28432762-28432858)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 38142224 - 38142112
Alignment:
Q  41 gatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtaggaaaaagcaaaggt-ggacggttcg 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  38142224 gatcaaatgacaaaatcaccccattacagataaatacccagacaaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcg 38142125  T
Q  140 ctttcagccacca 152  Q
    |||||||||||||    
T  38142124 ctttcagccacca 38142112  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 19324208 - 19324098
Alignment:
Q  42 atcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtaggaaaaagcaaaggt-ggacggttcgc 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  19324208 atcaaatgacaaaatcaccccattacagataaatacccagacaaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcgc 19324109  T
Q  141 tttcagccacc 151  Q
    |||||||||||    
T  19324108 tttcagccacc 19324098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 15669701 - 15669564
Alignment:
Q  16 aaaataaagggtaataaattaaaatgatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtag 115  Q
    |||| ||||||||| ||| |||||  ||| |||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  15669701 aaaacaaagggtaacaaaataaaaaaatcgaatgacaaaatcaccccattgcagataaatacccagacaaggtaaagggttcaaccaccacaaatggtag 15669602  T
Q  116 gaaaaagcaaaggt-ggacggttcgctttcagccacca 152  Q
    |||||||||||||| |||||||||||||||||||||||    
T  15669601 gaaaaagcaaaggtaggacggttcgctttcagccacca 15669564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 29626898 - 29626789
Alignment:
Q  41 gatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtaggaaaaagcaaaggt-ggacggttcg 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  29626898 gatcaaatgacaaaatcaccccattacagataaatacccagacaaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcg 29626799  T
Q  140 ctttcagcca 149  Q
    ||||||||||    
T  29626798 ctttcagcca 29626789  T

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Target: chr7; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 32575478 - 32575342
Alignment:
Q  16 aaaataaagggtaataaattaaaatgatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtag 115  Q
    |||| ||||||||| ||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||| |||||| |||||||||||||||||||||    
T  32575478 aaaacaaagggtaacaaaataaaaagatcaaatgacaaaatcacctcattacagataa-tacccagacaaggtaaagggttcaaccaccacaaatggtag 32575380  T
Q  116 gaaaaagcaaaggt-ggacggttcgctttcagccacca 152  Q
    |||||||||||||| |||||||||||||||||||||||    
T  32575379 gaaaaagcaaaggtaggacggttcgctttcagccacca 32575342  T

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Target: chr7; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 29125968 - 29126086
Alignment:
Q  35 taaaatgatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtaggaaaaagcaaaggt-ggac 133  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||    
T  29125968 taaaaagatcaaatggcaaaatcaccccattatagataaatacccagacaaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggac 29126067  T
Q  134 ggttcgctttcagccacca 152  Q
    |||||||||||||||||||    
T  29126068 ggttcgctttcagccacca 29126086  T

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Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 18299540 - 18299676
Alignment:
Q  16 aaaataaagggtaataaattaaaatgatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtag 115  Q
    |||| ||||||||| ||| ||||| |||||||  |||||  |||||||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||    
T  18299540 aaaacaaagggtaacaaaataaaaagatcaaacaacaaac-caccccattacaaataaatacccagaaaaggtaaagggttcaaccaccacaaatggtag 18299638  T
Q  116 gaaaaagcaaaggt-ggacggttcgctttcagccacca 152  Q
    |||||||||||| | ||||||||| |||||||||||||    
T  18299639 gaaaaagcaaagctaggacggttccctttcagccacca 18299676  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 17194037 - 17194077
Alignment:
Q  77 cccagacaagttaaaggattcaaccaccacaaatggtagga 117  Q
    |||| ||||| ||||||||||||||||||| ||||||||||    
T  17194037 cccaaacaaggtaaaggattcaaccaccacgaatggtagga 17194077  T

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Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 7093907 - 7093795
Alignment:
Q  41 gatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtaggaaaaagcaaaggt-ggacggttcg 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  7093907 gatcaaatgacaaaatcaccccattacagataaatacccagacaaggtaaagggttcaaccaccacaaatggtaggaaaaagcaaaggtaggacggttcg 7093808  T
Q  140 ctttcagccacca 152  Q
    |||||||||||||    
T  7093807 ctttcagccacca 7093795  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 24795240 - 24795329
Alignment:
Q  61 ccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtaggaaaaagcaaaggt-ggacggttcgctttcagcca 149  Q
    |||||||| ||||||||||| ||||| |||||| |||||||||||||||| ||||||||||  |||| | ||||||||||| ||||||||    
T  24795240 ccattacatataaatacccaaacaaggtaaagggttcaaccaccacaaatagtaggaaaaaataaagttaggacggttcgcattcagcca 24795329  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 30598324 - 30598461
Alignment:
Q  16 aaaataaagggtaataaattaaaatgatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtag 115  Q
    |||| ||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||| | |||||||||||||||||||||    
T  30598324 aaaacaaagggtaacaaaataaaaagatcaaatgacaaaatcaccccattatagataaatacccagacaaggtaaatggttcaaccaccacaaatggtag 30598423  T
Q  116 gaaaaagcaaaggt-ggacggttcgctttcagccacca 152  Q
    |||||||||||||| ||  |||||||||||||||||||    
T  30598424 gaaaaagcaaaggtaggttggttcgctttcagccacca 30598461  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 40345902 - 40346014
Alignment:
Q  41 gatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtaggaaaaagcaaaggt-ggacggttcg 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||  ||| |||||    
T  40345902 gatcaaatgacaaaatcaccccattacagataaatacccagacaaggtaaatggttcaaccaccacaaatggtaggaaaaagcaaaggtatgacagttcg 40346001  T
Q  140 ctttcagccacca 152  Q
    |||||||||||||    
T  40346002 ctttcagccacca 40346014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 50771815 - 50771678
Alignment:
Q  16 aaaataaagggtaataaattaaaatgatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtag 115  Q
    |||| ||||| ||| ||| |||||||||||||||||||||||| ||||||||||||||||| ||||| | | |||||| ||||||||| |||||| |||     
T  50771815 aaaacaaaggataacaaaataaaatgatcaaatgacaaaatcatcccattacagataaatatccagatagggtaaagggttcaaccactacaaattgtac 50771716  T
Q  116 gaaaaagcaaaggt-ggacggttcgctttcagccacca 152  Q
    |||||| ||||||| | |||||||||||||||||||||    
T  50771715 gaaaaaacaaaggtagaacggttcgctttcagccacca 50771678  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 15759942 - 15759830
Alignment:
Q  41 gatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtaggaaaaagcaaaggt-ggacggttcg 139  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  15759942 gatcaaatgacaaaatcactccattacagataaatacccagacaaggtaaagggttcaaccatcacaaatggtaggaaaaagcaaaggtaggacggttcg 15759843  T
Q  140 ctttcagccacca 152  Q
    |||||||||||||    
T  15759842 ctttcagccacca 15759830  T

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Target: scaffold0432 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 9109 - 8973
Alignment:
Q  16 aaaataaagggtaataaattaaaatgatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtag 115  Q
    |||| ||||||||| ||| ||||| ||||||||||||||  ||| |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||    
T  9109 aaaacaaagggtaacaaaataaaaagatcaaatgacaaac-cactccattacagataaatatccagacaaggtaaagggttcaaccaccacaaatggtag 9011  T
Q  116 gaaaaagcaaaggt-ggacggttcgctttcagccacca 152  Q
    |||||||||||| | |||||||||||||||||||||||    
T  9010 gaaaaagcaaagctaggacggttcgctttcagccacca 8973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 25982273 - 25982409
Alignment:
Q  16 aaaataaagggtaataaattaaaatgatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtag 115  Q
    |||| ||||||||| ||| ||||| |||||||||||||| | |||||||||||||||||||  |||||||| |||||| |||||||||||||||||||||    
T  25982273 aaaacaaagggtaacaaaataaaaagatcaaatgacaaact-accccattacagataaatattcagacaaggtaaagggttcaaccaccacaaatggtag 25982371  T
Q  116 gaaaaagcaaag-gtggacggttcgctttcagccacca 152  Q
    |||||| |||||  ||||||||||||||||||||||||    
T  25982372 gaaaaaacaaagcttggacggttcgctttcagccacca 25982409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 40973366 - 40973502
Alignment:
Q  16 aaaataaagggtaataaattaaaatgatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtag 115  Q
    |||| ||||||||| ||| ||||| ||||||||||||||  ||||||||||||||||||| | |||||||| ||||   |||||||||||||||||||||    
T  40973366 aaaacaaagggtaacaaaataaaaagatcaaatgacaaac-caccccattacagataaatgctcagacaaggtaaaaagttcaaccaccacaaatggtag 40973464  T
Q  116 gaaaaagcaaaggt-ggacggttcgctttcagccacca 152  Q
    ||||||| |||  | |||||||||||||||||||||||    
T  40973465 gaaaaagtaaaactaggacggttcgctttcagccacca 40973502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 53459001 - 53459138
Alignment:
Q  16 aaaataaagggtaataaattaaaatgatcaaatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtag 115  Q
    |||| ||||||||| |||  ||||  |||||||| |||||||||||||||||||||||||||||| ||||  |||||| |||||||||||| ||||||||    
T  53459001 aaaacaaagggtaacaaaacaaaaaaatcaaatggcaaaatcaccccattacagataaatacccaaacaatgtaaagggttcaaccaccaccaatggtag 53459100  T
Q  116 gaaaaagcaaaggt-ggacggttcgctttcagccacca 152  Q
    ||||||| |||||| | |||||||||||||||||||||    
T  53459101 gaaaaagtaaaggtagaacggttcgctttcagccacca 53459138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 26900539 - 26900438
Alignment:
Q  46 aatgacaaaatcaccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtaggaaaaagcaaaggt-ggacggttcgctttc 144  Q
    ||||||||||||||| ||||||||||||||| ||||||||| |||||  ||||||||||| ||||| ||||||||||||||||| |||| ||||||||||    
T  26900539 aatgacaaaatcacctcattacagataaatatccagacaagataaagagttcaaccaccataaatgataggaaaaagcaaaggtaggacagttcgctttc 26900440  T
Q  145 ag 146  Q
    ||    
T  26900439 ag 26900438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 28432858 - 28432762
Alignment:
Q  57 caccccattacagataaatacccagacaagttaaaggattcaaccaccacaaatggtaggaaaaagcaaaggt-ggacggttcgctttcagccacca 152  Q
    |||| ||||||||||| ||| | | ||| | |||| ||||||||||| |||||||||| || ||||||||| | ||||||||| |||||||||||||    
T  28432858 cacctcattacagatagataactaaacatggtaaatgattcaaccacgacaaatggtaagagaaagcaaagctaggacggttctctttcagccacca 28432762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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