View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14756_high_8 (Length: 296)
Name: NF14756_high_8
Description: NF14756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14756_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 280
Target Start/End: Complemental strand, 25912523 - 25912397
Alignment:
| Q |
154 |
ggaaaatgattctctgctgtcaaatagtgaccgtagaatgatatcaaccatctgatctgttagaatagtttttatttcatttttgatctttaaatattca |
253 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25912523 |
ggaaaatgattctcaatagtcaaatagtgactgtagaatgatatcaaccgtctaatttgttagaatagtttttatttcacttttgatctttaaatattca |
25912424 |
T |
|
| Q |
254 |
taatttgattttaatcgtaagaccaat |
280 |
Q |
| |
|
||| ||||| ||||||||||||||| |
|
|
| T |
25912423 |
caatccgatttcaatcgtaagaccaat |
25912397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 16495238 - 16495335
Alignment:
| Q |
155 |
gaaaatgattctctgctgtcaaatagtgaccgtagaatgatatcaaccatctgatctgttagaatagtttttatttcatttttgatctttaaatattc |
252 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||| || |||||||| |||||| ||||||||||||| || ||||||||||| |||| |
|
|
| T |
16495238 |
gaaaatgattctctgcagtcaaatagtgactctagaatgatatcagccgtctgatctattagaacagtttttatttcacttctgatctttaaacattc |
16495335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 11464571 - 11464660
Alignment:
| Q |
190 |
aatgatatcaaccatctgatctgttagaatagtttttatttcatttttgatctttaaatattcataatttgattttaatcgtaagaccaa |
279 |
Q |
| |
|
|||||||||| || |||||| || ||||| | ||||||||||| || ||||||||||||| ||| |||| ||||| ||||||||| |||| |
|
|
| T |
11464571 |
aatgatatcagccgtctgatttgatagaacaatttttatttcacttctgatctttaaataatcacaattcgatttcaatcgtaaggccaa |
11464660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 12322748 - 12322823
Alignment:
| Q |
11 |
gagatgaagagacacgtgttgatgagaatatttcacgggatgggtgtttttattttgtgtgtgtcacggacgaatgg |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12322748 |
gagatgaagagacacgtgttgatgagaatatttcacgggat-ggtgtttttattttgtgtgtgtcacggacgaatgg |
12322823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 172 - 280
Target Start/End: Original strand, 12322908 - 12323016
Alignment:
| Q |
172 |
gtcaaatagtgaccgtagaatgatatcaaccatctgatctgttagaatagtttttatttcatttttgatctttaaatattcataatttgattttaatcgt |
271 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||||||| | ||| ||||| |||||| |
|
|
| T |
12322908 |
gtcaagtagtgacggtagaatgatatcaaccatatgatatgttagaatagtttttatttcacttctgatctttaaatatttacaatccgatttcaatcgt |
12323007 |
T |
|
| Q |
272 |
aagaccaat |
280 |
Q |
| |
|
||||||||| |
|
|
| T |
12323008 |
aagaccaat |
12323016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 280
Target Start/End: Original strand, 5434921 - 5435007
Alignment:
| Q |
194 |
atatcaaccatctgatctgttagaatagtttttatttcatttttgatctttaaatattcataatttgattttaatcgtaagaccaat |
280 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||| ||| ||||| |||||||||| |||| |
|
|
| T |
5434921 |
atatcaaccgtctgatctattagaatagtttttatttcacttcctatctttaaatattcacaatccgatttcaatcgtaagatcaat |
5435007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University