View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14756_low_1 (Length: 535)
Name: NF14756_low_1
Description: NF14756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14756_low_1 |
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| [»] scaffold0133 (2 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 14 - 517
Target Start/End: Original strand, 16782107 - 16782611
Alignment:
| Q |
14 |
atgaatcaaagttgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgt |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16782107 |
atgaatcaaagttgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatctattaaatcagtggatgt |
16782206 |
T |
|
| Q |
114 |
agtttttctgcaacttgtgaatattggttgctatagnnnnnnnn-tatcagtacatgacagtgaggaaaactacatgacagtgggnnnnnnncaagatca |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16782207 |
agtttttctgcaacttgtgaatattggttgctatagaaaaaaaaatatcagtacatgacagtgaggaaaactacatgacagtgggaaaaaaacaagatca |
16782306 |
T |
|
| Q |
213 |
tgtccattcatttgctcagtgcctagaaaaattgtcctctttcaaaggtatggcttaattgttgataataactgttaaacggactagaatcacattccaa |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16782307 |
tgtccattcatttgctcagtgcctagaaaaattgttctctttcaaaggtatggcttaattgttgataataactgttaaacggactagaatcacattccaa |
16782406 |
T |
|
| Q |
313 |
aaactagcataataaaaggtgagagtgctcaaacacatttatacatatatgcataagaatgccggtaatgtgggaatccaaacaacttcaatattaatat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16782407 |
aaactagcataataaaaggtgagagtgctcaaacacatttatacatatatgcataagaatgtcggtaatgtgggaatccaaacaacttcaatattaatat |
16782506 |
T |
|
| Q |
413 |
ataaactggataaacaatggttcgtgagtgaatatctctttcatgaatgtgttgtaattgcaaacgcatcaacaaattgtttgaattctaagagtatagc |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16782507 |
ataaactggataaacaatggttcgtgagtgaatatctctttcatgaatgtgttgtaattgcaaacgcatcaacaaattgtttgaattctaagagtatagc |
16782606 |
T |
|
| Q |
513 |
catag |
517 |
Q |
| |
|
||||| |
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|
| T |
16782607 |
catag |
16782611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 324
Target Start/End: Original strand, 16839645 - 16839760
Alignment:
| Q |
210 |
tcatgtccattcatttgctcagtgcctagaaaaattgtcctctttcaaaggtatggcttaattgttgataataactgttaaacggactagaatcacattc |
309 |
Q |
| |
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|||||||| || |||| |||||||| ||| || ||||| ||| ||||||||| |||| |||| |||| ||||| ||||||| ||| |||||| ||||| |
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| T |
16839645 |
tcatgtccgtttatttactcagtgcttaggaatattgttgtctgtcaaaggtagggctcaattattgagaataattgttaaatggagaagaatctcattc |
16839744 |
T |
|
| Q |
310 |
caaaaa-ctagcataa |
324 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
16839745 |
caaaaatctagcataa |
16839760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 9509 - 9644
Alignment:
| Q |
14 |
atgaatcaaagttgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgt |
113 |
Q |
| |
|
||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9509 |
atgaatcaaagttgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgt |
9608 |
T |
|
| Q |
114 |
agtttttctgcaacttgtgaatattggttgctatag |
149 |
Q |
| |
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|||| ||||||||| ||| || ||||| |||||||| |
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| T |
9609 |
agttcttctgcaacatgtcaaaattggctgctatag |
9644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 13857 - 13965
Alignment:
| Q |
14 |
atgaatcaaagttgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgt |
113 |
Q |
| |
|
||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13857 |
atgaatcaaagttgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgt |
13956 |
T |
|
| Q |
114 |
agtttttct |
122 |
Q |
| |
|
|||| |||| |
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|
| T |
13957 |
agttcttct |
13965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 38938502 - 38938331
Alignment:
| Q |
27 |
gtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgtagtttttctgcaa |
126 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||||| || ||||||| |||||||||||| | |||||||||||||||||||||| |||||||| |
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| T |
38938502 |
gtttggattggagatg-ctttgctctaggaagatgaaatatgtgtagttattttttttcaaagattgtctattaaatcagtggatgtagttcttctgcaa |
38938404 |
T |
|
| Q |
127 |
cttgtgaatattggttgc--tatagnnnnnnnntatcagtacatgacagtgaggaaaactacatgacagtggg |
197 |
Q |
| |
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||||| |||||||| ||| || || |||||||||||||||||| |||||||||||||| ||||| |
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| T |
38938403 |
cttgtcaatattggctgctgtagagagaaaaaaaatcagtacatgacagtgacgaaaactacatgactgtggg |
38938331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 359 - 426
Target Start/End: Complemental strand, 38938237 - 38938169
Alignment:
| Q |
359 |
atatgcataagaatgccggtaatgtgggaatccaaac-aacttcaatattaatatataaactggataaa |
426 |
Q |
| |
|
||||| || |||| || |||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
38938237 |
atatgtatgagaacgctggtaatgtgggaatccaaacgaacttcaatattaatatataaaatggataaa |
38938169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 517
Target Start/End: Complemental strand, 38938152 - 38938092
Alignment:
| Q |
457 |
gaatgtgttgtaattgcaaacgcatcaacaaattgtttgaattctaagagtatagccatag |
517 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||||||| ||||| ||||||| ||||||||| |
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|
| T |
38938152 |
gaatgtgttgaaattacaaactcatcaacaaattgttggaattttaagagtctagccatag |
38938092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 38938277 - 38938237
Alignment:
| Q |
274 |
ttgataataactgttaaacgg-actagaatcacattccaaa |
313 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
38938277 |
ttgataataattgttaaacgggactagaatcacattccaaa |
38938237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 10169 - 10264
Alignment:
| Q |
54 |
ggaagatgaaatatgagttgttatttgttttcaaagattatgtattaaatcagtggatgtagtttttctgcaacttgtgaatattggttgctatag |
149 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| ||| || |||| |||||||| |
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| T |
10169 |
ggaagatgaaatatgcgttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttttgcaacatgtcaaaattgactgctatag |
10264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 11983167 - 11983113
Alignment:
| Q |
27 |
gtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgt |
81 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
11983167 |
gtttggattggagatgactttgctctatgaagatgaaatatgcgttattatttgt |
11983113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 11982865 - 11982816
Alignment:
| Q |
209 |
atcatgtccattcatttgctcagtgcctagaaaaattgtcctctttcaaa |
258 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
11982865 |
atcatgtccattcatttgctcagtgagcagaaacattgttctctttcaaa |
11982816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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