View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14756_low_3 (Length: 462)
Name: NF14756_low_3
Description: NF14756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14756_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 8822304 - 8822748
Alignment:
| Q |
1 |
caacctccgtggcgagtcagaagatccaatcatctcaaaatccggcaagtccggttacatgactggaaaaatctcaccggagatttgcaaaattgacagc |
100 |
Q |
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| T |
8822304 |
caacctccgtggcgagtcagaagatccaatcatctcaaaatccggcaagtctggttacatgaccggaaaaatctcaccggagatttgcaaaattgacagc |
8822403 |
T |
|
| Q |
101 |
ctcacttccttcatactcgccgattggaaagctatctccggtgagattccacaatgtctcacttctctctccaatctccgcattttggatcttatcggaa |
200 |
Q |
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| T |
8822404 |
ctcacttccttcatactcgccgattggaaagctatctccggtgagattccacaatgtctcacttctctctccaatctccgcattttggatcttatcggaa |
8822503 |
T |
|
| Q |
201 |
accagctcaccggaaaaattccggtgaacattggaaagttacaacgactgactgttctgaacctcgctgagaattcaatctctggcgagattccaacgtc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8822504 |
accagctcaccggaaaaattccggtgaacattggaaagttacaacgactgactgttctgaacctcgctgagaattcaatctctggcgagattccaacgtc |
8822603 |
T |
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| Q |
301 |
agtcgttgaactatgttctcttaagcatcttgatttaagcagcaacagtttaaccggttcgattccggttaattttggaaatctccaaatgttaagccgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8822604 |
agtcgttgaactatgttctcttaagcatcttgatttaagcagcaacagtttaaccggttcgattccggttaattttggaaatcttcaaatgttaagccgt |
8822703 |
T |
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| Q |
401 |
gcgttgttgaaccggaatcaattaaccggttccattccggtttca |
445 |
Q |
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| T |
8822704 |
gcgttgttgaaccggaatcaattaaccggttccattccggtttca |
8822748 |
T |
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