View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14756_low_5 (Length: 373)

Name: NF14756_low_5
Description: NF14756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14756_low_5
NF14756_low_5
[»] chr4 (1 HSPs)
chr4 (47-93)||(53302778-53302824)
[»] chr2 (3 HSPs)
chr2 (47-93)||(30269369-30269415)
chr2 (47-93)||(31331878-31331924)
chr2 (47-93)||(31338607-31338653)
[»] chr6 (1 HSPs)
chr6 (45-92)||(30825201-30825248)
[»] chr8 (2 HSPs)
chr8 (47-93)||(25641257-25641303)
chr8 (130-188)||(34863703-34863761)
[»] chr3 (1 HSPs)
chr3 (47-93)||(7403857-7403903)
[»] chr5 (3 HSPs)
chr5 (47-93)||(5075906-5075952)
chr5 (47-93)||(7413271-7413317)
chr5 (47-93)||(37190658-37190704)


Alignment Details
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 53302778 - 53302824
Alignment:
Q  47 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  53302778 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 53302824  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 30269369 - 30269415
Alignment:
Q  47 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30269369 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 30269415  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 31331924 - 31331878
Alignment:
Q  47 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 93  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  31331924 gcaaaatcaaaacaaaaaccaacacaatacaaaactcacacttcatc 31331878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 31338653 - 31338607
Alignment:
Q  47 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 93  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  31338653 gcaaaatcaaaacaaaaaccaacacaatacaaaactcacacttcatc 31338607  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 30825201 - 30825248
Alignment:
Q  45 aggcaaaatcaaaacaataaccaacacaatacaaaactcacacttcat 92  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  30825201 aggcaaaatcaaaataataaccaacacaatacaaaactcacacttcat 30825248  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 25641257 - 25641303
Alignment:
Q  47 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 93  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  25641257 gcaaaatcaaaacaaaaaccaacacaatacaaaactcacacttcatc 25641303  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 34863703 - 34863761
Alignment:
Q  130 gaagcttgtggttgcgcatagaacagatctatggaaattgaagaagcagaacacgatta 188  Q
    ||||| ||||||| |  |||||||||||| |||||||||||||||||||||| ||||||    
T  34863703 gaagcatgtggttacaaatagaacagatccatggaaattgaagaagcagaacgcgatta 34863761  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 7403903 - 7403857
Alignment:
Q  47 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 93  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  7403903 gcaaaatcaaaacaaaaaccaacacaatacaaaactcacacttcatc 7403857  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 5075952 - 5075906
Alignment:
Q  47 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 93  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  5075952 gcaaaatgaaaacaataaccaacacaacacaaaactcacacttcatc 5075906  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 7413271 - 7413317
Alignment:
Q  47 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 93  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  7413271 gcaaaatgaaaacaataaccaacacaacacaaaactcacacttcatc 7413317  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 37190658 - 37190704
Alignment:
Q  47 gcaaaatcaaaacaataaccaacacaatacaaaactcacacttcatc 93  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||||    
T  37190658 gcaaaatgaaaacaagaaccaacgcaacacaaaactcacacttcatc 37190704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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