View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14756_low_6 (Length: 371)
Name: NF14756_low_6
Description: NF14756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14756_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 47220876 - 47221229
Alignment:
| Q |
1 |
ctggatatcagcactgtaaatgcgattcttattttacttgttctttcattcatcttgtcccttcattgaagaaagttatgcattggaggctgcaatttgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47220876 |
ctggatatcagcactgtaaatgcgattcttattttacttgttctttcattcatcttgtcccttcattgaagaaagttatgcattggaagctgcaatttgc |
47220975 |
T |
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| Q |
101 |
aaagatgaaaagaaaaatgatatttaaagagataaaagacttgagaattgttatagttgctcgttattttaacctgttctctgccttttttcgtcacgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47220976 |
aaagatgaaaagaaaaatgatatttaaagagataaaagacttgagaattgttatagttgctcgttattttaacctgttctctgccttttttcgtcacgag |
47221075 |
T |
|
| Q |
201 |
ttttgttaatgatttcaatgcttttgtgtgcttgtaggtggtccaaacgctgcatgtgctgtttgtgcggcgttctttatcgtgatagagaagttcctgg |
300 |
Q |
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| T |
47221076 |
ttttgttaatgatttcaatgcttttgtgtgcttgtaggtggtccaaacgctgcatgtgctgtttgtgcggcattctttatcgtgatagagaagttcctgg |
47221175 |
T |
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| Q |
301 |
agtggcttgaaaagtgagttgacttaagtaaaggacaacagacagtattcgtgg |
354 |
Q |
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| T |
47221176 |
agtggcttgaaaagtgagttgacttaagtaaaggacaacaaacagtattcgtgg |
47221229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 35330328 - 35330300
Alignment:
| Q |
326 |
aagtaaaggacaacagacagtattcgtgg |
354 |
Q |
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| T |
35330328 |
aagtaaaggacaacagacagtattcgtgg |
35330300 |
T |
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