View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14756_low_7 (Length: 326)
Name: NF14756_low_7
Description: NF14756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14756_low_7 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 6325606 - 6325896
Alignment:
| Q |
19 |
atgaaaagacaacacactaaaattaatttctctagataggaagcgacctaactgcaggtaactcggaaataccactctcaattttaccctcaaaaacttt |
118 |
Q |
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||||||| |||||||||| |||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6325606 |
atgaaaatacaacacactgaaattaatttctttatataggaagcgacctaactacaggtaactcggaaataccactctcagttttaccctcaaaaacttt |
6325705 |
T |
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| Q |
119 |
cttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325706 |
cttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaatt |
6325805 |
T |
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| Q |
219 |
gtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattgatgtgaa |
309 |
Q |
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| T |
6325806 |
gtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaatctcttgatgtgaa |
6325896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 38 - 312
Target Start/End: Original strand, 6333102 - 6333376
Alignment:
| Q |
38 |
aaattaatttctctagataggaagcgacctaactgcaggtaactcggaaataccactctcaattttaccctcaaaaactttcttgatcctttctggaatc |
137 |
Q |
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| T |
6333102 |
aaattaatttctctagataggaatcgacctaactgcaggtaactccgaatcgccactctgagtctgaccctcaaacactttcttgatcctttctggaatc |
6333201 |
T |
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| Q |
138 |
cattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccatta |
237 |
Q |
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| T |
6333202 |
aattgatagatttcatttttactcttatagcacatcaaagcaaagatgaagatcaacaaacccaaataaatccaagcaattgtaggagaaattatcatca |
6333301 |
T |
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| Q |
238 |
aagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattgatgtgaaaat |
312 |
Q |
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| T |
6333302 |
aagctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaactcttgatgtgaaaat |
6333376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 117 - 309
Target Start/End: Complemental strand, 6242966 - 6242784
Alignment:
| Q |
117 |
ttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaa |
216 |
Q |
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||||||||||||| ||||||||||||| ||||||| ||| | |||||||| |||||||||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
6242966 |
ttcttgatcctttttggaatccattgaaagagttcttttcgattcttatagaacatcaaagcaaagattaagatccacaaacccaaataaatccaagcaa |
6242867 |
T |
|
| Q |
217 |
ttgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattgatgtgaa |
309 |
Q |
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| T |
6242866 |
ttgtcggcgaaat----------gctaaaattgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaa |
6242784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 104 - 309
Target Start/End: Original strand, 6346285 - 6346490
Alignment:
| Q |
104 |
accctcaaaaactttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaa |
203 |
Q |
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|||||||||||| ||||||||||||| ||||||| |||||||||||| |||||| ||| |||||||||||||||||||| |||||||| || |||||| |
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| T |
6346285 |
accctcaaaaacattcttgatcctttgtggaatcatttgatagagttcttttttattctcatagcacatcaaagcaaagagtaagatccacaagcccaaa |
6346384 |
T |
|
| Q |
204 |
taaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactattga |
303 |
Q |
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| T |
6346385 |
aaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagttcttga |
6346484 |
T |
|
| Q |
304 |
tgtgaa |
309 |
Q |
| |
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|||||| |
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| T |
6346485 |
tgtgaa |
6346490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 104 - 309
Target Start/End: Complemental strand, 6219828 - 6219620
Alignment:
| Q |
104 |
accctcaaaaactttcttgatcctttctggaatccat---tgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||| || ||| | ||| |||||||||||||| ||||| |||||||| || | | |
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| T |
6219828 |
accctcaaaaactttcttgatcctttctggaatcaatatttgatagagctcttttcgattctcatagcacatcaaagaaaagagtaagatccacaagcac |
6219729 |
T |
|
| Q |
201 |
aaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaggaaactat |
300 |
Q |
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||| ||||||| |||||||| || ||||| | ||| ||||||| || ||||||||||||||||||||||| ||| | |||| || | |||||||| || | |
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| T |
6219728 |
aaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctct |
6219629 |
T |
|
| Q |
301 |
tgatgtgaa |
309 |
Q |
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||||||||| |
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| T |
6219628 |
tgatgtgaa |
6219620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 264
Target Start/End: Complemental strand, 6219298 - 6219151
Alignment:
| Q |
117 |
ttcttgatcctttctggaatccattgatagagttcatttttactcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaa |
216 |
Q |
| |
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||||||||||||| |||||| |||||||||||| ||| | | ||||||| |||||||| ||| || |||||| | | || |||| |||||| |||| |
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| T |
6219298 |
ttcttgatcctttggggaatcatttgatagagttcttttcgatttttatagcccatcaaagaaaatattaagatcaacagcccgaaatcaatccaagcaa |
6219199 |
T |
|
| Q |
217 |
ttgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaa |
264 |
Q |
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| || || |||||| ||| ||||||||||| ||||||||||||||| |
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| T |
6219198 |
tggtaggggaaatattcatcaaagctaaaataaaaacaacacttccaa |
6219151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 1106 - 992
Alignment:
| Q |
195 |
aaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaagga |
294 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | |||| || | || |||| |
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| T |
1106 |
aaacccaaataaatccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggagga |
1007 |
T |
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| Q |
295 |
aactattgatgtgaa |
309 |
Q |
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||||||||||||||| |
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| T |
1006 |
aactattgatgtgaa |
992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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