View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14756_low_8 (Length: 310)
Name: NF14756_low_8
Description: NF14756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14756_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 12322771 - 12322465
Alignment:
| Q |
1 |
catcaacacgtgtctcttcatctcctctcatgaaaaataaagtaatgtgaccacaaactgaaaatgaagactttctttcttagttcttgaaatttctgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12322771 |
catcaacacgtgtctcttcatctcctctcatgaaaaataaagtaatgtgaccacaaactgaaaatgaagactttctttcttagttcttgaaatttctgca |
12322672 |
T |
|
| Q |
101 |
gaatcttcttatagctgcatgtgaaaatattgcctaagaattgaaactatgaccatactatacgtaacaatgaaccactaataacatgtcacgtgttata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12322671 |
gaatcttcttatagctgcatgtgaaaatattgcctaagaattgaaactatgaccatactatacgtaacaatgaaccactaataacatgtcacgtgttata |
12322572 |
T |
|
| Q |
201 |
gcttataatcacaaacacttttgtcacctcagaacacnnnnnnngtgcactcacgaatctctctagtcacttaattggttttgttgtttatgaagtttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12322571 |
gcttataatcacaaacacttttgtcacctcagaacacaaaaaaagtgcactcacgaatctctctagtcacttaattggttttgttgtttatgaagtttct |
12322472 |
T |
|
| Q |
301 |
ttctctg |
307 |
Q |
| |
|
||||||| |
|
|
| T |
12322471 |
ttctctg |
12322465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University