View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14756_low_9 (Length: 297)

Name: NF14756_low_9
Description: NF14756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14756_low_9
NF14756_low_9
[»] chr4 (25 HSPs)
chr4 (146-295)||(1913674-1913823)
chr4 (146-295)||(1873935-1874082)
chr4 (145-295)||(25687500-25687648)
chr4 (162-294)||(25697285-25697415)
chr4 (145-295)||(16325661-16325808)
chr4 (158-297)||(23188030-23188167)
chr4 (146-295)||(12659135-12659281)
chr4 (158-295)||(12439247-12439382)
chr4 (146-295)||(16334706-16334852)
chr4 (177-295)||(30679766-30679882)
chr4 (158-295)||(12428838-12428973)
chr4 (153-295)||(18890071-18890209)
chr4 (146-295)||(29333705-29333842)
chr4 (146-295)||(910795-910937)
chr4 (177-295)||(30673673-30673789)
chr4 (158-295)||(23200595-23200730)
chr4 (146-295)||(12665653-12665792)
chr4 (146-295)||(12435303-12435437)
chr4 (146-295)||(42404711-42404845)
chr4 (240-295)||(917324-917379)
chr4 (240-295)||(42411175-42411230)
chr4 (161-282)||(33360139-33360259)
chr4 (178-297)||(48305317-48305432)
chr4 (242-293)||(4393790-4393841)
chr4 (178-294)||(55325552-55325666)
[»] scaffold0014 (2 HSPs)
scaffold0014 (145-295)||(111944-112094)
scaffold0014 (146-223)||(106133-106210)
[»] chr5 (11 HSPs)
chr5 (146-295)||(35264483-35264630)
chr5 (146-295)||(35270224-35270371)
chr5 (158-295)||(39653882-39654017)
chr5 (146-297)||(23053325-23053471)
chr5 (146-295)||(23058900-23059044)
chr5 (146-295)||(21171132-21171277)
chr5 (146-295)||(25365339-25365484)
chr5 (214-295)||(16675630-16675709)
chr5 (146-295)||(21177993-21178140)
chr5 (33-81)||(41919396-41919444)
chr5 (245-277)||(2135850-2135882)
[»] chr1 (17 HSPs)
chr1 (158-295)||(11660246-11660381)
chr1 (158-295)||(27347120-27347257)
chr1 (158-295)||(11654089-11654224)
chr1 (158-295)||(31092902-31093037)
chr1 (158-295)||(31099508-31099643)
chr1 (158-295)||(18540660-18540795)
chr1 (158-295)||(18534934-18535069)
chr1 (145-295)||(38736108-38736255)
chr1 (146-295)||(37365095-37365241)
chr1 (178-295)||(35625225-35625342)
chr1 (158-281)||(39492823-39492944)
chr1 (146-295)||(37356677-37356823)
chr1 (178-295)||(7876160-7876274)
chr1 (238-295)||(28512878-28512935)
chr1 (238-295)||(28519343-28519400)
chr1 (146-295)||(38984980-38985114)
chr1 (146-295)||(38991167-38991301)
[»] chr2 (11 HSPs)
chr2 (146-295)||(25445002-25445149)
chr2 (158-295)||(43293091-43293228)
chr2 (14-152)||(1688897-1689029)
chr2 (146-297)||(25454664-25454809)
chr2 (160-295)||(43287348-43287483)
chr2 (145-295)||(19437482-19437627)
chr2 (146-295)||(19443058-19443202)
chr2 (146-294)||(24056568-24056713)
chr2 (146-295)||(24053233-24053378)
chr2 (242-286)||(8872318-8872362)
chr2 (242-295)||(31437220-31437273)
[»] chr3 (12 HSPs)
chr3 (158-297)||(49486680-49486816)
chr3 (188-297)||(49491204-49491313)
chr3 (146-294)||(21473174-21473319)
chr3 (158-295)||(21453229-21453363)
chr3 (158-295)||(21458403-21458537)
chr3 (146-295)||(15752443-15752589)
chr3 (146-295)||(15758236-15758382)
chr3 (146-295)||(21883493-21883637)
chr3 (146-295)||(21477560-21477706)
chr3 (146-295)||(2982125-2982269)
chr3 (212-295)||(2978244-2978325)
chr3 (192-295)||(21877233-21877336)
[»] chr8 (12 HSPs)
chr8 (158-295)||(30714170-30714305)
chr8 (158-295)||(30721947-30722082)
chr8 (158-295)||(30727555-30727690)
chr8 (212-295)||(37204303-37204384)
chr8 (212-295)||(37209780-37209861)
chr8 (240-295)||(21241240-21241295)
chr8 (240-295)||(21247744-21247799)
chr8 (240-295)||(27679660-27679715)
chr8 (240-289)||(27683442-27683491)
chr8 (178-295)||(24042832-24042944)
chr8 (258-295)||(26196965-26197002)
chr8 (145-204)||(27679580-27679636)
[»] scaffold0102 (1 HSPs)
scaffold0102 (158-297)||(14092-14229)
[»] chr6 (4 HSPs)
chr6 (158-295)||(18738642-18738777)
chr6 (190-295)||(33660877-33660983)
chr6 (146-295)||(23427550-23427684)
chr6 (146-295)||(23421704-23421838)
[»] scaffold0258 (1 HSPs)
scaffold0258 (143-295)||(6218-6368)
[»] chr7 (9 HSPs)
chr7 (146-295)||(29185592-29185736)
chr7 (146-295)||(29176613-29176757)
chr7 (181-295)||(340269-340383)
chr7 (199-297)||(346521-346619)
chr7 (239-295)||(8242610-8242666)
chr7 (212-295)||(22822605-22822686)
chr7 (212-295)||(22826908-22826989)
chr7 (239-295)||(8248179-8248235)
chr7 (239-275)||(25830423-25830459)
[»] scaffold0079 (1 HSPs)
scaffold0079 (146-295)||(58008-58154)
[»] scaffold0591 (1 HSPs)
scaffold0591 (146-295)||(9392-9533)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 1913674 - 1913823
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||    
T  1913674 tgttatgaaaataagtaaatagacatgataataatagagagacggagaagaagagagaatatgagcagtattcttattcactgatgtgtgtatctcaatg 1913773  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1913774 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 1913823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 1873935 - 1874082
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||  | |||||||||| |||||||||  ||||||||||    
T  1873935 tgttatgaaaataagtaaatagacatgataataatagagagaaggagaagaggagagaataggaaaagtattcttattcactgatgtg--tatctcaatg 1874032  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1874033 ttacaaatgagctatatttatagggaaatagagtagcctatgaattaagc 1874082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 145 - 295
Target Start/End: Original strand, 25687500 - 25687648
Alignment:
Q  145 atgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaat 244  Q
    ||||||| || | ||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||| |||||||||| |||||  | ||||| |||||    
T  25687500 atgttatgaatacaagtaaatagagatgataataatagagagaaggagaagaagagaaaataggagcagtattcttattcactga--tctatatatcaat 25687597  T
Q  245 gttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  25687598 gttacaaatgagctctgtttatagggaaatagagtagcttatgaattaagc 25687648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 162 - 294
Target Start/End: Original strand, 25697285 - 25697415
Alignment:
Q  162 aaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctcta 261  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||| ||||| |||||||||| |||||| | ||||||  ||||||||||||||||||||    
T  25697285 aaatagagatgataataatagagagaaggagaagaagagaaaataggagcagtattcttattcactgatctatatatc--aatgttacaaatgagctcta 25697382  T
Q  262 tttatagggaaatagagtagcctatgaattaag 294  Q
    ||||||||||||||||||||| |||||||||||    
T  25697383 tttatagggaaatagagtagcttatgaattaag 25697415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 145 - 295
Target Start/End: Original strand, 16325661 - 16325808
Alignment:
Q  145 atgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaat 244  Q
    ||||||| ||||||||||||||||   || | ||||||||||||||||||||| |||||||| || ||||||||||||| | | |||||| |||||||||    
T  16325661 atgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagagaataggaacaatattcttattcaataatgtgtgtatctcaat 16325757  T
Q  245 gttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||| | ||||| |||||| |||||| |||||    
T  16325758 gttacaaatgagctctatttataagaaaatatagtagcttatgaactaagc 16325808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 158 - 297
Target Start/End: Complemental strand, 23188167 - 23188030
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    |||||||| || ||||||||||||||||||||||||||||  ||||||| || || |||||||||| ||| || ||| ||||  ||||||||||||||||    
T  23188167 aagtaaattgagatgataataatagagagaaggagaagaagtgagaataggaacagtattcttattcacttatctgtctatc--aatgttacaaatgagc 23188070  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagctc 297  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  23188069 tctatttatagggaaatagagtagcttatgaactaagctc 23188030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 12659135 - 12659281
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||| |||| |||||||| |||||||||||||| |||||||||| ||| |||||| ||||||| ||    
T  12659135 tgttatgaaaataagtaaataga---gagagtaatagaaagaatgagaagaagagagaatatgagcagtattcttattcactaatgtgtgtatctcagtg 12659231  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||| | |||||||||||| |||||| |||||    
T  12659232 ttacaaatgagctctatttataagaaaatagagtagcttatgaactaagc 12659281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 12439247 - 12439382
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| || ||  | | |  |||| |||||||||||||     
T  12439247 aagtaaatagagatgataataatagagagaaggagaagaagagagaatatgagcagtattcttattcaccga--tctctcactcactgttacaaatgagt 12439344  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  12439345 tctatttatagggaaatagagtagcttatgaactaagc 12439382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 16334706 - 16334852
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||||||||||||||||| ||| |||| || ||||||||||||| | | |||||| ||||||||||    
T  16334706 tgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagataataggaacaatattcttattcaataatgtgtgtatctcaatg 16334802  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||| | ||||| |||||| |||||| |||||    
T  16334803 ttacaaatgagctctatttataagaaaatatagtagcttatgaactaagc 16334852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 177 - 295
Target Start/End: Original strand, 30679766 - 30679882
Alignment:
Q  177 taatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatag 276  Q
    ||||||||||||||||||||| |||||||| ||||| |||||||||| ||| |||| | ||||  |||||||||||||||||||||||||||||||||||    
T  30679766 taatagagagaaggagaagaagagagaataagagcagtattcttattcactaatgtatttatc--aatgttacaaatgagctctatttatagggaaatag 30679863  T
Q  277 agtagcctatgaattaagc 295  Q
    |||||| |||||| |||||    
T  30679864 agtagcttatgaactaagc 30679882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 12428838 - 12428973
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||||||||| || ||  | | |  |||| |||||||||||||     
T  12428838 aagtaaatagagatgataataatagagagaaggagaagaagagagaataggagcagtattcttattcacgga--tctctcactcactgttacaaatgagt 12428935  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  12428936 tctatttatagggaaatagagtagcttatgaactaagc 12428973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 153 - 295
Target Start/End: Complemental strand, 18890209 - 18890071
Alignment:
Q  153 aaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatg-agcaatattcttatttactgatgtgtatatctcaatgttacaa 251  Q
    ||||||||||||||||   || | |||||||||||| |||||||| |||||||| | || |||||||||||| ||| |||||||||||  ||||||||||    
T  18890209 aaaataagtaaataga---gagagtaatagagagaaagagaagaagagagaataaggagaaatattcttattcactaatgtgtatatc--aatgttacaa 18890115  T
Q  252 atgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||    
T  18890114 atgagttctatttatagggaaatagagtagcttatgaattaagc 18890071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 29333842 - 29333705
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||| |||  ||||||    ||||||    
T  29333842 tgttatgaaaataagtaaatagacatgataataatagagagaaggagaagaagagaga--------aatattcttattcactagtgtgta----tcaatg 29333755  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||| ||||||||||||||||||||||  |||||| |||||    
T  29333754 ttacaaatgagctttatttatagggaaatagagtaggttatgaactaagc 29333705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 910795 - 910937
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    ||||||||| |||||||||||||   || | |||||||||||||||||||||  || |||| ||||| |||||||||| |||||| ||| ||||  ||||    
T  910795 tgttataaatataagtaaataga---gacactaatagagagaaggagaagaa--gaaaataggagcagtattcttattcactgatctgtgtatc--aatg 910887  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  910888 ttacaaatgagctctatttataggaaaatagagtagcttatgaactaagc 910937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 295
Target Start/End: Original strand, 30673673 - 30673789
Alignment:
Q  177 taatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatag 276  Q
    ||||||||||||||||||| | |||||||| ||||| |||||||||| ||| |||| | ||||  |||||||||||||| ||||||||||||||||||||    
T  30673673 taatagagagaaggagaaggagagagaataagagcagtattcttattcactaatgtatttatc--aatgttacaaatgaactctatttatagggaaatag 30673770  T
Q  277 agtagcctatgaattaagc 295  Q
    |||||| |||||| |||||    
T  30673771 agtagcttatgaactaagc 30673789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 23200730 - 23200595
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    |||||||| || | |||||||||||||||||||||||||| |||||||| || || ||||| ||||  ||||| ||| ||||  |||||||||||||||     
T  23200730 aagtaaattgagaggataataatagagagaaggagaagaagagagaataggaacagtattcgtattcgctgatctgtctatc--aatgttacaaatgagt 23200633  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||| ||||||| | |||||| |||||    
T  23200632 tctatttatagggaagtagagtaacttatgaactaagc 23200595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 12665653 - 12665792
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||| ||||||||||||| |||||||| ||||| |||||||||| ||| |||||| ||||          
T  12665653 tgttatgaaaataagtaaataga---gagagtaatagaaagaaggagaagaagagagaataggagcagtattcttattcactaatgtgtgtatc------ 12665743  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
     ||||||||||||||||||||| | |||||||||||| |||||| |||||    
T  12665744 -tacaaatgagctctatttataagaaaatagagtagcttatgaactaagc 12665792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 12435303 - 12435437
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| || |||||||||||||   || | ||||||||||||||||||||| ||||||        ||||||||||| |||  |||||||    |||||    
T  12435303 tgttatgaatataagtaaataga---gacagtaatagagagaaggagaagaagagagaa--------atattcttattcactagtgtgtat----caatg 12435387  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  12435388 ttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 12435437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 42404845 - 42404711
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| || |||||||||||||   || | ||||||||||||||||||||| ||||||        ||||||||||| |||  |||||||    |||||    
T  42404845 tgttatgaatataagtaaataga---gacagtaatagagagaaggagaagaagagagaa--------atattcttattcactagtgtgtat----caatg 42404761  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  42404760 ttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 42404711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 917324 - 917379
Alignment:
Q  240 tcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  917324 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 917379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 42411230 - 42411175
Alignment:
Q  240 tcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  42411230 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 42411175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 33360139 - 33360259
Alignment:
Q  161 taaatagacatgataataatagagagaaggagaagaaaagagaatatg-agcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctc 259  Q
    |||||||| ||||||||||||||||||||  |||||| |||||||| | || |  ||| ||||| ||| |||   ||||||||||||||| |||||||||    
T  33360139 taaatagagatgataataatagagagaagttgaagaagagagaatagggagaagcatttttattcacttatgc--atatctcaatgttacgaatgagctc 33360236  T
Q  260 tatttatagggaaatagagtagc 282  Q
    |||||||| | ||||||||||||    
T  33360237 tatttataagaaaatagagtagc 33360259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 48305317 - 48305432
Alignment:
Q  178 aatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaataga 277  Q
    ||||||||||| |||||||| |||||||| | | |||||||||||| ||||||||  |   || |||||||||| ||| |||||||||||||||||||||    
T  48305317 aatagagagaaagagaagaagagagaataag-gaaatattcttattcactgatgt--actactgaatgttacaa-tgaactctatttatagggaaataga 48305412  T
Q  278 gtagcctatgaattaagctc 297  Q
    ||||| ||| || |||||||    
T  48305413 gtagcatataaactaagctc 48305432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 4393790 - 4393841
Alignment:
Q  242 aatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaa 293  Q
    ||||||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  4393790 aatgttacaaatgagctttatttatagggaaataaagtagcttatgaattaa 4393841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 55325666 - 55325552
Alignment:
Q  178 aatagagagaaggagaagaaaagagaatat-gagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatag 276  Q
    ||||||||||| |||||||  ||||||||  ||| | |||| ||||| |||||||| |   ||||||||| ||||||||||| ||||||||||||||||     
T  55325666 aatagagagaatgagaagatgagagaataaagagaagtattattattcactgatgttt---tctcaatgtaacaaatgagctttatttatagggaaataa 55325570  T
Q  277 agtagcctatgaattaag 294  Q
    |||||  |||||| ||||    
T  55325569 agtagtttatgaactaag 55325552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 145 - 295
Target Start/End: Complemental strand, 112094 - 111944
Alignment:
Q  145 atgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaat 244  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||| |||||||||    
T  112094 atgttatgaaaataagtaaatagacatgataataatagagagaaggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaat 111995  T
Q  245 gttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  111994 gttacaaatgaactctatttatagggaaatagagtagcctatgaattaagc 111944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 106210 - 106133
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatt 223  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||    
T  106210 tgttatgaaaataaataaatagacatgataataatagagagaaggagaagaagagagaataggagcagtattcttatt 106133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 35264483 - 35264630
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||  ||||||||||    
T  35264483 tgttatgaaaataagtaaatagacatgataataatagagagaaggagaagaagagagaataggagcagtattcttattcactgatgtg--tatctcaatg 35264580  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35264581 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 35264630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 35270224 - 35270371
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||  ||||||||||    
T  35270224 tgttatgaaaataagtaaatagacatgataataatagagagaaggagaagaagagagaataggagcagtattcttattcactgatgtg--tatctcaatg 35270321  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35270322 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 35270371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 39653882 - 39654017
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||  ||||||||| ||||||||    
T  39653882 aagtaaatagagatgataataatagagagaaggagaagaagagagaataagagcagtattcttattcactgatgtgtata--tcaatgttataaatgagc 39653979  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||| ||||||| |||||| ||||||||||||    
T  39653980 tctatttataaggaaatatagtagcttatgaattaagc 39654017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 146 - 297
Target Start/End: Original strand, 23053325 - 23053471
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||||||||||||||||| |||||||| ||||| |||||||||| ||| |||||| |  |||||||    
T  23053325 tgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagagaataagagcagtattcttattcactaatgtgtgt--ctcaatg 23053419  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagctc 297  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23053420 ttacaaatgagctctatttatagggaaatagagtagcttatgaattaagctc 23053471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 23058900 - 23059044
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||||||||||||||||| |||||||| ||||| |||||||||| ||| |||||| |  |||||||    
T  23058900 tgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagagaataagagcagtattcttattcactaatgtgtgt--ctcaatg 23058994  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23058995 ttacaaatgagctctatttatagggaaatagagtagcttatgaattaagc 23059044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 21171132 - 21171277
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaa--tattcttatttactgatgtgtatatctcaa 243  Q
    |||||| ||||||||||||||||   || |  |||||||||| ||||||||| ||| | || ||| ||  |||||||||| ||| ||||||||  |||||    
T  21171132 tgttatgaaaataagtaaataga---gacatgaatagagagatggagaagaagagatacta-gagaaaagtattcttattcacttatgtgtat--ctcaa 21171225  T
Q  244 tgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21171226 tgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagc 21171277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 25365339 - 25365484
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatg-agcaatattcttatttactgatgtgtatatctcaat 244  Q
    |||||| ||||||||||||||||   || | |||||||||||  |||||||| |||||||| | || |||||||||||| ||| |||||| | |  ||||    
T  25365339 tgttatgaaaataagtaaataga---gagagtaatagagaga--gagaagaagagagaataaggagaaatattcttattcactaatgtgtgttttacaat 25365433  T
Q  245 gttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  25365434 gttacaaatgagctctatttataggaaaatagagtagcttatgaactaagc 25365484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 16675709 - 16675630
Alignment:
Q  214 tattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  16675709 tattcttattcacttatgtgtat--ctcaatgttacaaatgagctctatttatagggaaatatagtagcttatgaattaagc 16675630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 21177993 - 21178140
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaa--tattcttatttactgatgtgtatatctcaa 243  Q
    |||||| ||||||||||||||||   || |  |||||||||||||||||||| ||| | || ||| ||  |||||||||| ||| ||||||||  |||||    
T  21177993 tgttatgaaaataagtaaataga---gacatgaatagagagaaggagaagaagagatacta-gagaaaagtattcttattcacttatgtgtat--ctcaa 21178086  T
Q  244 tgttacaaatgagctctatttatagggaa--atagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||||||| ||  |||||||||| ||||||||||||    
T  21178087 tgttacaaatgagctctatttataggaaaatatagagtagcttatgaattaagc 21178140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 41919396 - 41919444
Alignment:
Q  33 tgaagttgctgaagctattaaaatgcgtggtcaacataacattattgct 81  Q
    ||||||||||| ||||||||||| |||||||||||| ||||| ||||||    
T  41919396 tgaagttgctgcagctattaaaaagcgtggtcaacaaaacataattgct 41919444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 2135850 - 2135882
Alignment:
Q  245 gttacaaatgagctctatttatagggaaataga 277  Q
    ||||||||||||||||||||||| |||||||||    
T  2135850 gttacaaatgagctctatttatatggaaataga 2135882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 11660381 - 11660246
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||  ||||||||||||||||||    
T  11660381 aagtaaatagagatgataataatagagagaaggagaagaagagagaatatgagcagtattcttattcactgatgtgtata--tcaatgttacaaatgagc 11660284  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11660283 tctatttatagggaaatagagtagcttatgaattaagc 11660246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 27347120 - 27347257
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||| |||   |||||||||| |||||||||| ||||||||||||||||||||||    
T  27347120 aagtaaatagagatgataataatagagagaaggagaagaagagagaataagagatgtattcttattcactgatgtgtgtatctcaatgttacaaatgagc 27347219  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  27347220 tctatttatagggaaatagagtagcttatgaattaagc 27347257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 11654224 - 11654089
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||||||||| | |||||||||||  |||||||||||||||| |    
T  11654224 aagtaaatagagatgataataatagagagaaggagaagaagagagaataggagcagtattcttattcattgatgtgtata--tcaatgttacaaatgaac 11654127  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  11654126 tctatttatagggaaatagaatagcttatgaattaagc 11654089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 31092902 - 31093037
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||| ||||| |||| ||||| |||||||| ||||||  ||||||||||||||||    
T  31092902 aagtaaacagagatgataataatagagagaaggagaagaagagagaataggagcagtatttttattcactgatgtatatatc--aatgttacaaatgagc 31092999  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31093000 tctatttatagggaaatagagtagcttatgaattaagc 31093037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 31099508 - 31099643
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||| ||||| |||| ||||| |||||||| ||||||  ||||||||||||||||    
T  31099508 aagtaaacagagatgataataatagagagaaggagaagaagagagaataagagcagtatttttattcactgatgtatatatc--aatgttacaaatgagc 31099605  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31099606 tctatttatagggaaatagagtagcttatgaattaagc 31099643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 18540660 - 18540795
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||| |||||||||| |||||| ||||||  ||||||||||||||||||    
T  18540660 aagtaaatagagatgataataatagagagaaggagaagaagagaaaataggagcagtattcttattcactgatctgtata--tcaatgttacaaatgagc 18540757  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||| |||||||||||| |||||| |||||    
T  18540758 tctatttataggaaaatagagtagcttatgaactaagc 18540795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 18534934 - 18535069
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| |||  ||||| |||||||||| |||||| ||||||  ||||||||||||||||||    
T  18534934 aagtaaatagagatgataataatagagagaaggagaagaagagaaaatcggagcagtattcttattcactgatctgtata--tcaatgttacaaatgagc 18535031  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||| |||||||||||| |||||| |||||    
T  18535032 tctatttataggaaaatagagtagcttatgaactaagc 18535069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 145 - 295
Target Start/End: Complemental strand, 38736255 - 38736108
Alignment:
Q  145 atgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaat 244  Q
    ||||||| ||||||||||||||||   || | ||| ||||||||||||||||| |||||||||||||| |||| ||||| |||||||| | ||||| |||    
T  38736255 atgttatgaaaataagtaaataga---gagagtaacagagagaaggagaagaagagagaatatgagcagtattattattcactgatgtatgtatctgaat 38736159  T
Q  245 gttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||| ||||||||||| | |||||||||||| |||||| |||||    
T  38736158 gttacaaatgaactctatttataagaaaatagagtagcttatgaactaagc 38736108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 37365095 - 37365241
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||||||||||||||||| |||||||| || || |||||||||| | | |||||| ||||||||||    
T  37365095 tgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagagaataggaacagtattcttattcaataatgtgtgtatctcaatg 37365191  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||| | ||||| |||||| |||||| |||||    
T  37365192 ttacaaatgagctctatttataagaaaatatagtagcttatgaactaagc 37365241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 35625225 - 35625342
Alignment:
Q  178 aatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaataga 277  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||| | | |||||| |||||||||||||||||||||||||||||||| | ||||| |    
T  35625225 aatagagagaaggagaagaagagagaataggagcagtattcttattcaataatgtgtgtatctcaatgttacaaatgagctctatttataagaaaatata 35625324  T
Q  278 gtagcctatgaattaagc 295  Q
    ||||| |||||| |||||    
T  35625325 gtagcttatgaactaagc 35625342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 158 - 281
Target Start/End: Complemental strand, 39492944 - 39492823
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||  | ||||||||| | ||||||||||      
T  39492944 aagtaaatagagatgataataatagagagaaggagaagaagagagaatatgagcagtattcttattcactga--tatatatctcactcttacaaatgaat 39492847  T
Q  258 tctatttatagggaaatagagtag 281  Q
    | ||||||||| ||||||||||||    
T  39492846 tttatttatagagaaatagagtag 39492823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 37356677 - 37356823
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||||||||||||||||| |||||||| || |  |||||||||| | | |||||| ||||||||||    
T  37356677 tgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagagaataggaacggtattcttattcaataatgtgtgtatctcaatg 37356773  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||| |||||||||||||||||| | ||||| |||||| |||||| |||||    
T  37356774 ttataaatgagctctatttataagaaaatatagtagcttatgaactaagc 37356823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 295
Target Start/End: Complemental strand, 7876274 - 7876160
Alignment:
Q  178 aatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaataga 277  Q
    |||||||| || |||||||| |||||||| | | |||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||| |    
T  7876274 aatagagaaaatgagaagaagagagaataag-gaaatattcttattcactaatgtgtat--ctcaatgttacaaatgagctctatttatagggaaatata 7876178  T
Q  278 gtagcctatgaattaagc 295  Q
    ||||| || ||| |||||    
T  7876177 gtagcttacgaactaagc 7876160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 28512935 - 28512878
Alignment:
Q  238 tctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  28512935 tctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 28512878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 28519400 - 28519343
Alignment:
Q  238 tctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  28519400 tctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 28519343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 38985114 - 38984980
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| || |||||||||||||   || | ||||||||||||||||||||| ||||||        ||||||||||| |||  |||||||    |||||    
T  38985114 tgttatgaatataagtaaataga---gacagtaatagagagaaggagaagaagagagaa--------atattcttattcactagtgtgtat----caatg 38985030  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  38985029 ttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 38984980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 38991301 - 38991167
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| || |||||||||||||   || | ||||||||||||||||||||| ||||||        ||||||||||| |||  |||||||    |||||    
T  38991301 tgttatgaatataagtaaataga---gacagtaatagagagaaggagaagaagagagaa--------atattcttattcactagtgtgtat----caatg 38991217  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  38991216 ttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 38991167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 25445002 - 25445149
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||||||| ||| | |||||||||| |||||||||| ||  ||||||    
T  25445002 tgttataaatacaagtaaatagagatgataataatagagagaaggagaagaagagagaataggaggagtattcttattcactgatgtgtgta--tcaatg 25445099  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25445100 ttacaaatgagctctatttatagggaaatagagtagcttatgaattaagc 25445149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 43293091 - 43293228
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||| |||| |||||||||||||||||    
T  43293091 aagtaaatagagatgataataatagagagaaggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatcccaatgttacaaatgagc 43293190  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||| | |||||||||||| |||||| |||||    
T  43293191 tctatttataagaaaatagagtagcttatgaactaagc 43293228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 1688897 - 1689029
Alignment:
Q  14 taagaaatgccaaagttggtgaagttgctgaagctattaaaatgcgtggtcaacataacattattgctnnnnnnntacaggtacaaaatgaaaatatata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||      ||||||||||    
T  1688897 taagaaatgccaaagttggtgaagttgctgaagctattaaaatgcgtggtcaacataacattattgctaaaaaaatacaggtac------aaaatatata 1688990  T
Q  114 gttttgtagtcaataatatataactttggacatgttata 152  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  1688991 gttttgtagtcaataatatataactttggacatattata 1689029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 146 - 297
Target Start/End: Original strand, 25454664 - 25454809
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||||||    ||||| ||||| |||||||||| | |||||||| ||||  ||||    
T  25454664 tgttataaatacaagtaaatagagatgataataatagagagaaggagaagaa----gaataggagcagtattcttattcaatgatgtgtgtatc--aatg 25454757  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagctc 297  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25454758 ttacaaatgagctctatttatagggaaatagagtagcttatgaattaagctc 25454809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 43287348 - 43287483
Alignment:
Q  160 gtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctc 259  Q
    ||||||||| |||||||||||||||||||| ||||||| |||||||| ||||| |||||||||| ||| |||||| ||||||||||||||||||||||||    
T  43287348 gtaaatagagatgataataatagagagaagaagaagaagagagaataggagcagtattcttattcactaatgtgtgtatctcaatgttacaaatgagctc 43287447  T
Q  260 tatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||| | |||||||||||| |||||| |||||    
T  43287448 tatttataagaaaatagagtagcttatgaactaagc 43287483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 145 - 295
Target Start/End: Original strand, 19437482 - 19437627
Alignment:
Q  145 atgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaat 244  Q
    ||||||| ||||||||||||||||   || | ||||||||||||||||||||| |||||||| ||||| |||||||||| ||| |||||| |  ||||||    
T  19437482 atgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagagaataagagcagtattcttattcactaatgtgtgt--ctcaat 19437576  T
Q  245 gttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19437577 gttacaaatgagctctatttatagggaaatagagtagcttatgaattaagc 19437627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 19443058 - 19443202
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||||||||||||||||| |||||||| ||||| |||||||||| ||| |||||| |  |||||||    
T  19443058 tgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagagaataagagcagtattcttattcactaatgtgtgt--ctcaatg 19443152  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  19443153 ttacaaatgagctctatttataggaaaatagagtagcttatgaattaagc 19443202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 146 - 294
Target Start/End: Original strand, 24056568 - 24056713
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || |  ||| |||||||||||||||||||||||||  |||| |||||||||| ||| |||||| ||||||||||    
T  24056568 tgttatgaaaataagtaaataga---gagagcaatggagagaaggagaagaaaagagaatagaagcagtattcttattcactaatgtgtgtatctcaatg 24056664  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaag 294  Q
    |||||||||||||||||||||| | |||||||||||| |||||| ||||    
T  24056665 ttacaaatgagctctatttataagaaaatagagtagcttatgaactaag 24056713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 24053233 - 24053378
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || |  ||| ||||||||||||||||||||||||| ||||| |||||||||| ||| |||| | |||||||||     
T  24053233 tgttatgaaaataagtaaataga---gagagcaatggagagaaggagaagaaaagagaataggagca-tattcttattcactaatgtatgtatctcaata 24053328  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||| | |||||||||||| |||||| |||||    
T  24053329 ttacaaatgagctctatttataagaaaatagagtagcttatgaactaagc 24053378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 8872362 - 8872318
Alignment:
Q  242 aatgttacaaatgagctctatttatagggaaatagagtagcctat 286  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||    
T  8872362 aatgttacaaatgaactctatttatagggaaatatagtagcctat 8872318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 31437273 - 31437220
Alignment:
Q  242 aatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||| || |||||||||| |||||||||||| |||||| |||||    
T  31437273 aatgttacaaatgaactttatttataggaaaatagagtagcttatgaactaagc 31437220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 158 - 297
Target Start/End: Original strand, 49486680 - 49486816
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||   |||||||| |||||||| ||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  49486680 aagtaaatagagatgataataatagagag---gagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagc 49486776  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagctc 297  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  49486777 tctatttatagagaaatagagtagcctatgaattaagctc 49486816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 49491204 - 49491313
Alignment:
Q  188 aggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatg 287  Q
    |||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  49491204 aggagaagaagagagaatatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatagagaaatagagtagcctatg 49491303  T
Q  288 aattaagctc 297  Q
    ||||||||||    
T  49491304 aattaagctc 49491313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 146 - 294
Target Start/End: Complemental strand, 21473319 - 21473174
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||| ||||||||||    
T  21473319 tgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagagaataggagcagtattcttattcactgatgtgtgtatctcaatg 21473223  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaag 294  Q
    |||||||||||||||||||||| | |||||||||||| |||||| ||||    
T  21473222 ttacaaatgagctctatttataagaaaatagagtagcttatgaactaag 21473174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 21453363 - 21453229
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||   ||||||| ||||| |||||||||| |||||||||| |||| |||||||||||||||||    
T  21453363 aagtaaatagagatgataataatagagagaaggagaaga---gagaataggagcagtattcttattcactgatgtgtgtatcccaatgttacaaatgagc 21453267  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||| | |||||||||||| |||||| |||||    
T  21453266 tctatttataagaaaatagagtagcttatgaactaagc 21453229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 21458537 - 21458403
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||||||||||||||||||   ||||||| ||||| |||||||||| |||||||||| |||| |||||||||||||||||    
T  21458537 aagtaaatagagatgataataatagagagaaggagaaga---gagaataggagcagtattcttattcactgatgtgtgtatcccaatgttacaaatgagc 21458441  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||| | |||||||||||| |||||| |||||    
T  21458440 tctatttataagaaaatagagtagcttatgaactaagc 21458403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 15752443 - 15752589
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||||||||||||||||| |||||||  ||||| |||||||||| ||| |||||| ||||||||||    
T  15752443 tgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagagaattagagcagtattcttattcactaatgtgtgtatctcaatg 15752539  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||| | |||||||||||| |||||| |||||    
T  15752540 ttacaaatgagctctatttataagaaaatagagtagcttatgaactaagc 15752589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 15758236 - 15758382
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||||||||||||||||| |||||||  ||||| |||||||||| ||| |||||| ||||||||||    
T  15758236 tgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagagaattagagcagtattcttattcactaatgtgtgtatctcaatg 15758332  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||| | |||||||||||| |||||| |||||    
T  15758333 ttacaaatgagctctatttataagaaaatagagtagcttatgaactaagc 15758382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 21883637 - 21883493
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | |||||||||||  |||||||| |||||||| ||| ||||||| |||| |||||||||| |||| |||||    
T  21883637 tgttatgaaaataagtaaataga---gagagtaatagagaga--gagaagaagagagaataggagaaatattcctattcactgatgtgtgtatcccaatg 21883543  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||| | |||||||||||| |||||| |||||    
T  21883542 ttacaaatgagctctatttataagaaaatagagtagcttatgaactaagc 21883493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 21477706 - 21477560
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| |||||||||||| |||   || | ||||||||||||| ||||||| |||||||| ||||| ||||||||||||| ||||||| ||||||||||    
T  21477706 tgttatgaaaataagtaaacaga---gagagtaatagagagaagaagaagaagagagaataggagcagtattcttatttaccgatgtgtgtatctcaatg 21477610  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||| |||||||||   ||||| |||||| |||||| |||||    
T  21477609 ttacaaatgagccctatttataaaaaaataaagtagcttatgaactaagc 21477560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 295
Target Start/End: Original strand, 2982125 - 2982269
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaat-atgagcaatattcttatttactgatgtgtatatctcaat 244  Q
    |||||| ||||||||||||||||   || | |||||||||||  |||| ||| ||||||| | ||| |||||||||||| ||| |||||||||||  |||    
T  2982125 tgttatgaaaataagtaaataga---gagagtaatagagagagagaga-gaagagagaattaggagaaatattcttattcacttatgtgtatatc--aat 2982218  T
Q  245 gttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  2982219 gttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 2982269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 2978244 - 2978325
Alignment:
Q  212 aatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||||||||||||| |||||||||||| |||||| |||||    
T  2978244 aatattcttattcactgatgtgtatatc--aatgttacaaatgagctctatttataggaaaatagagtagcttatgaactaagc 2978325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 295
Target Start/End: Complemental strand, 21877336 - 21877233
Alignment:
Q  192 gaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaatt 291  Q
    |||||| |||||||| ||| ||||||| |||| |||||||||| |||| ||||||||||||||||||| ||||||| | |||||||||||| |||||| |    
T  21877336 gaagaagagagaataggagaaatattcctattcactgatgtgtgtatcccaatgttacaaatgagctccatttataagaaaatagagtagcttatgaact 21877237  T
Q  292 aagc 295  Q
    ||||    
T  21877236 aagc 21877233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 30714170 - 30714305
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| ||| ||||||||||||||| |||||||| |||||||| ||||| |||||||||| |||||||||||||  ||||||||||||||||||    
T  30714170 aagtaaatagagatggtaataatagagagaatgagaagaagagagaataggagcagtattcttattcactgatgtgtata--tcaatgttacaaatgagc 30714267  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  30714268 tctatttatagggaaatagagtagcttatgaattaagc 30714305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 30721947 - 30722082
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| ||| ||||||||||||||| |||||||| |||||||| ||||| |||||||||| |||||||||||||  ||||||||||||||||||    
T  30721947 aagtaaatagagatggtaataatagagagaatgagaagaagagagaataggagcagtattcttattcactgatgtgtata--tcaatgttacaaatgagc 30722044  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  30722045 tctatttatagggaaatagagtagcttatgaattaagc 30722082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 30727555 - 30727690
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| ||| ||||||||||||||| |||||||| |||||||| ||||| |||||||||| |||||||||||||  ||||||||||||||||||    
T  30727555 aagtaaatagagatggtaataatagagagaatgagaagaagagagaataggagcagtattcttattcactgatgtgtata--tcaatgttacaaatgagc 30727652  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||| |||| ||||| |||||| ||||||||||||    
T  30727653 tctatttttaggaaaatatagtagcttatgaattaagc 30727690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 37204384 - 37204303
Alignment:
Q  212 aatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||| |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  37204384 aatattcttattcactgatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagc 37204303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 37209861 - 37209780
Alignment:
Q  212 aatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||| |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  37209861 aatattcttattcactgatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagc 37209780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 21241295 - 21241240
Alignment:
Q  240 tcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  21241295 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 21241240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 21247799 - 21247744
Alignment:
Q  240 tcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  21247799 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 21247744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 27679660 - 27679715
Alignment:
Q  240 tcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||| |||||    
T  27679660 tcaatgttacaaattagctctatttatagggaaatagagtagcttatgaactaagc 27679715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 27683442 - 27683491
Alignment:
Q  240 tcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaa 289  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  27683442 tcaatgttacaaatgagctctatttatagggaaatagagtaacttatgaa 27683491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 24042832 - 24042944
Alignment:
Q  178 aatagagagaaggagaagaaaagagaatatg-agcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatag 276  Q
    |||||||||||| |||||||||||||| | | || |||||||||||| |      ||| ||| | ||||||||| ||||||||||||||||| |||||||    
T  24042832 aatagagagaagaagaagaaaagagaacaaggagaaatattcttattca------tgtgtattttaatgttacatatgagctctatttatagagaaatag 24042925  T
Q  277 agtagcctatgaattaagc 295  Q
    |||||| |||||| |||||    
T  24042926 agtagcttatgaactaagc 24042944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 26197002 - 26196965
Alignment:
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  26197002 tctatttatagggaaatagagtagcttatgaactaagc 26196965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 27679580 - 27679636
Alignment:
Q  145 atgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaa 204  Q
    ||||||| || |||||||||||||   || ||||||||||||||||||||||| ||||||    
T  27679580 atgttatgaatataagtaaataga---gacaataatagagagaaggagaagaagagagaa 27679636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 158 - 297
Target Start/End: Complemental strand, 14229 - 14092
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||| |||||||||| |||||||||  | ||||||||||||||||||||    
T  14229 aagtaaatagagatgataataatagcgagaaggagaagaagagagaataggagcagtattcttattcactgatgtg--tctctcaatgttacaaatgagc 14132  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagctc 297  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  14131 tctatttatagggaaatagagtagcttatgaactaagctc 14092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 18738777 - 18738642
Alignment:
Q  158 aagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagc 257  Q
    ||||||||||| |||||||||||| || |||||||||||| ||| |||| ||||| |||||||||||||||| |||| |  |||||||||||||||||||    
T  18738777 aagtaaatagagatgataataataaagggaaggagaagaagagaaaataggagcagtattcttatttactgacgtgtct--ctcaatgttacaaatgagc 18738680  T
Q  258 tctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||| |||||||||||| |||||| |||||    
T  18738679 tctatttataggtaaatagagtagcttatgaactaagc 18738642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 295
Target Start/End: Original strand, 33660877 - 33660983
Alignment:
Q  190 gagaagaaaagagaatatg-agcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatga 288  Q
    |||||||| |||||||| | || |||||||||||| || ||||||| |||||||||||||||||||| ||||||||||| | |||||||||||| |||||    
T  33660877 gagaagaagagagaataaggagaaatattcttattcaccgatgtgtgtatctcaatgttacaaatgaactctatttataagaaaatagagtagcttatga 33660976  T
Q  289 attaagc 295  Q
    | |||||    
T  33660977 actaagc 33660983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 23427684 - 23427550
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| || ||||||||||||| ||   | ||||||||||||||||||||| ||||||        ||||||||||| |||  |||||||    |||||    
T  23427684 tgttatgaatataagtaaatagatat---agtaatagagagaaggagaagaagagagaa--------atattcttattaactagtgtgtat----caatg 23427600  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  23427599 ttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 23427550  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 23421838 - 23421704
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| || ||||||||||||| ||   | ||||||||||||||||||||| ||||||        ||||||||||| |||  |||||||    |||||    
T  23421838 tgttatgaatataagtaaatagatat---agtaatagagagaaggagaagaagagagaa--------atattcttattaactagtgtgtat----caatg 23421754  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||| | |||||| |||||    
T  23421753 ttacaaatgagctctatttatagggaaatagagtaacttatgaactaagc 23421704  T

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Target: scaffold0258 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 143 - 295
Target Start/End: Original strand, 6218 - 6368
Alignment:
Q  143 acatgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctca 242  Q
    ||||||||| || | ||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||   ||  ||||    
T  6218 acatgttatgaatacaagtaaatagagatgataataatagagagaaggagaagaagagagaataggagcaatattcttattcactgatgc--atcactca 6315  T
Q  243 atgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
     |||||||| |||| |||||||| |||||||||||||||| |||||| |||||    
T  6316 ctgttacaattgagttctatttacagggaaatagagtagcttatgaactaagc 6368  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 29185736 - 29185592
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||||||||||||||||| | ||||||  |||| |||||||||| ||| |||||| ||||  ||||    
T  29185736 tgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagaaagaatagaagcagtattcttattcactaatgtgtgtatc--aatg 29185642  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  29185641 ttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 29185592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 29176757 - 29176613
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| |||||||||||||||| |    | ||||||||||||||||||||| | ||||||  |||| |||||||||| ||| |||||| ||||  ||||    
T  29176757 tgttatgaaaataagtaaatagaaag---agtaatagagagaaggagaagaagaaagaatagaagcagtattcttattcactaatgtgtgtatc--aatg 29176663  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  29176662 ttacaaatgagctctatttatagggaaatagagtagcttatgaactaagc 29176613  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 340269 - 340383
Alignment:
Q  181 agagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatagagta 280  Q
    |||||||  |||||||| |||||||| ||| ||||||| |||| |||||||||| |||| ||||||||||||||||||||||||||| | ||||||||||    
T  340269 agagagagagagaagaagagagaataggagaaatattcctattcactgatgtgtgtatcccaatgttacaaatgagctctatttataagaaaatagagta 340368  T
Q  281 gcctatgaattaagc 295  Q
    || |||||| |||||    
T  340369 gcttatgaactaagc 340383  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 346521 - 346619
Alignment:
Q  199 agagaatatgagcaatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagctc 297  Q
    |||||||| ||| ||||||| |||| |||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||| |||||| |||||||    
T  346521 agagaataggagaaatattcctattcactgatgtgtgtatcccaatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagctc 346619  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 8242666 - 8242610
Alignment:
Q  239 ctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8242666 ctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagc 8242610  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 22822686 - 22822605
Alignment:
Q  212 aatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||| |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  22822686 aatattcttattcactgatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagc 22822605  T

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Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 22826989 - 22826908
Alignment:
Q  212 aatattcttatttactgatgtgtatatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||| |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  22826989 aatattcttattcactgatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagc 22826908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 8248235 - 8248179
Alignment:
Q  239 ctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  8248235 ctcaatgttacaaatgagctctatttataggaaaatagagtagcttatgaattaagc 8248179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 25830423 - 25830459
Alignment:
Q  239 ctcaatgttacaaatgagctctatttatagggaaata 275  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  25830423 ctcaatgctacaaaggagctctatttatagggaaata 25830459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 58154 - 58008
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | ||||||||||||||||||||| ||| |||| || ||||||||||||| | | |||||| ||||||||||    
T  58154 tgttatgaaaataagtaaataga---gagagtaatagagagaaggagaagaagagataataggaacaatattcttattcaataatgtgtgtatctcaatg 58058  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||| | ||||| |||||| |||||| |||||    
T  58057 ttacaaatgagctctatttataagaaaatatagtagcttatgaactaagc 58008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 9533 - 9392
Alignment:
Q  146 tgttataaaaataagtaaatagacatgataataatagagagaaggagaagaaaagagaatatgagcaatattcttatttactgatgtgtatatctcaatg 245  Q
    |||||| ||||||||||||||||   || | |||||||||||    |||||| |||||||| ||| |||||||||||| | |||||||| |||| |||||    
T  9533 tgttatgaaaataagtaaataga---gagagtaatagagaga----gaagaagagagaataggagaaatattcttattca-tgatgtgtgtatcccaatg 9442  T
Q  246 ttacaaatgagctctatttatagggaaatagagtagcctatgaattaagc 295  Q
    |||||||||||||||||||||| | |||||||||||| |||||| |||||    
T  9441 ttacaaatgagctctatttataagaaaatagagtagcttatgaactaagc 9392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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