View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_high_1 (Length: 777)
Name: NF14757_high_1
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 4607839 - 4608087
Alignment:
| Q |
10 |
gaagaatatatactcaaatgggtttttgaaatgaaactatactcaatgagttttttgaactagaagaaaactctttctaactagctagctcacgggtttc |
109 |
Q |
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| T |
4607839 |
gaagaaaatatactcaaatgggtttttgaaatgaaactatactcaatgagttttttgaactagaagaaaactctttctaactag----ctcacgggtttc |
4607934 |
T |
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| Q |
110 |
tttgttttttagtgggtatctttcatacgtaatagtacacattgttccagaaagttttccaattgttgttggaaccatttgacagtgattttttagattg |
209 |
Q |
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| T |
4607935 |
tttgttttttagtgggtatctttcatacgtaatagtacacattgttccagaaagttttccaattgttgttggaaccatttgccagtgattttttagattg |
4608034 |
T |
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| Q |
210 |
ttattgggtgagttgaaagtactttttgaatttaagattagatatcatatgaa |
262 |
Q |
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| T |
4608035 |
ttattgggtgagttgaaagtactttttgaatttaagattagatatcatatgaa |
4608087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 602 - 761
Target Start/End: Original strand, 4608512 - 4608670
Alignment:
| Q |
602 |
ccaccgtttgtctattgagcacttatctggtattgaataatattttccttaatgtttagattctttagatttttgcactaaactccacttgttttgtcat |
701 |
Q |
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| T |
4608512 |
ccaccgtttgtctattgagcacttatttggtattgaataatattttccttaatgtttagattctttagatttttgcactaaactccacttgttttgtcat |
4608611 |
T |
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| Q |
702 |
tccacactctctctttttaaattttaccaaattccctcgtattgcgtttattcaacattt |
761 |
Q |
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| T |
4608612 |
tccacactctctc-ttttaaattttaccaaattccctcgtattgcgtttattcaacattt |
4608670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 326 - 405
Target Start/End: Original strand, 4608236 - 4608315
Alignment:
| Q |
326 |
tgttttgtctctaattcttgtctcttcaatatgaaggtgttttagattttgaagttttatgcaagtaatattctaatggg |
405 |
Q |
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| T |
4608236 |
tgttttgtctctaattcttgtctcttcaatatgaaggtgttttagattttgaagttttatgcaagtaatattctaatggg |
4608315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 469 - 542
Target Start/End: Original strand, 4608379 - 4608452
Alignment:
| Q |
469 |
gagcctctctctgataactttctgtgacatctttttgtcatgtaatacagttcttcacgagctagtgtcagaag |
542 |
Q |
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| T |
4608379 |
gagcctctctctgataactttctgtgacatctttttgtcatgtaatacagttcttcacgagctagtgtcagaag |
4608452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 4608132 - 4608203
Alignment:
| Q |
307 |
cctatgattaatgttattatgttttgtctctaattcttgtctcttcaatatgaaggtgttttagattttgaa |
378 |
Q |
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| T |
4608132 |
cctatgattaatgttattatgttttgtctctaattcttgtctctttaccatgtaggtgttttagattttgaa |
4608203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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