View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_high_11 (Length: 327)
Name: NF14757_high_11
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 64 - 308
Target Start/End: Complemental strand, 2517033 - 2516789
Alignment:
| Q |
64 |
taccggatctttgttaagatatgtttttgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaagg |
163 |
Q |
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| T |
2517033 |
taccggatctttgttaagatatgtttttgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaagg |
2516934 |
T |
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| Q |
164 |
aacatgaatttgaccgtttgttactatccattgcatgcaaatgttggagtgagcatgtttagtatgtgtgataccacatggcttaataatttggagtgca |
263 |
Q |
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| T |
2516933 |
aacatgaatttgaccgtttgttactatccattgcatgcaaatgttggagtgagcatgtttagtatgtgtgataccacatggcttaataatttggagtgca |
2516834 |
T |
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| Q |
264 |
cataaatttattatatttggtcttgctactatactaaataccatt |
308 |
Q |
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| T |
2516833 |
cataaatttattatatttggtcttgctactatactaaataccatt |
2516789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 82 - 253
Target Start/End: Complemental strand, 2512779 - 2512608
Alignment:
| Q |
82 |
atatgtttttgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaaggaacatgaatttgaccgtt |
181 |
Q |
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| T |
2512779 |
atatgtttatgaagagagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataatttttagagaatgaaaggaacatgaatttaactgtt |
2512680 |
T |
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| Q |
182 |
tgttactatccattgcatgcaaatgttggagtgagcatgtttagtatgtgtgataccacatggcttaataat |
253 |
Q |
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| T |
2512679 |
acttactatctcttgcatgtaaatttggaagtgagcatgtttagtatgtgtgataccacatggctcaataat |
2512608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 91 - 269
Target Start/End: Complemental strand, 2509517 - 2509336
Alignment:
| Q |
91 |
tgaagaaagaagtgaaaggaaggactaaaagaaggtaatattcatacgaaaataatttatagagaatgaaaggaacatgaatttgaccgtttgttactat |
190 |
Q |
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| T |
2509517 |
tgaagaaagaagggaatggaaggactaaaagaaggtaatagtcatacgaaaataattttcagagaatgaaaggaacattaatttaactgttacttactat |
2509418 |
T |
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| Q |
191 |
ccattgcatgcaaatgttggagtgagcatgtttagtatgtgtgataccacatggcttaa---taatttggagtgcacataaa |
269 |
Q |
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| T |
2509417 |
ctcttgcatgtaaatttcgaagtgagcatgtttagtatgtgtgatactacatggcttaataataatttggagtgcacctaaa |
2509336 |
T |
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