View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14757_high_18 (Length: 284)
Name: NF14757_high_18
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 19569594 - 19569861
Alignment:
| Q |
1 |
atggtcctccaatggatagggtaatatattgtatgttctaataaccacatttgtnnnnnnnnnnntata--catacccaagctcataccttcgtgaaaaa |
98 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||| | |||||||||||||| ||||||| |
|
|
| T |
19569594 |
atggtcctccaatggatatggtactatattgtatgttctaataaccacatttgtaaaaaaaaaaatatatacatatctaagctcataccttcatgaaaaa |
19569693 |
T |
|
| Q |
99 |
caactttactgttcgtaccgatgccatgtgggcatctaagtactcatgcctgttacccacatagcttatgagaaagatgcagcaacaacggttgtttagg |
198 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19569694 |
caactttactgttcgtaccgatgccatctgggcatctaagtactcatgcccattacccacatagcttatgagaaagatgcagcaacaacggttgtttagg |
19569793 |
T |
|
| Q |
199 |
gtaaggtttaaacacttttttnnnnnnnnngttttagatttaaataactataaaaagtttacaattaatt |
268 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19569794 |
gtaaggtttaaacac--ttttaaaaaaaaagttttagatttaaataactataaaaagtctacaattaatt |
19569861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University