View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14757_high_19 (Length: 280)
Name: NF14757_high_19
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 9086823 - 9087078
Alignment:
| Q |
11 |
caaaggtgagtcctaaggttatgcatatgtaacactcatctactcggttaaagtataatcgaaaaccaaattatttggaataatggaatcaaataattat |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9086823 |
caaaggtgagtcctaaggttatgcaaatgtaacactcatctactcggttaaagtataatcgaaaaccaaattatttggaataatggaatcaaataattat |
9086922 |
T |
|
| Q |
111 |
ttgggattaatattatcatacctgttgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtgtctaaaagaagattctctggctgc |
210 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9086923 |
ttgggattaatattatcatacctgctgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtatctaaaagaagattctctggctgc |
9087022 |
T |
|
| Q |
211 |
aaaatatagggagtaatattcttttgattaact-aaacataagaaagagtaaaaat |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
9087023 |
aaaatatagggagtaatattcttttgattaactaaaacttaagaaagagtaaaaat |
9087078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 265
Target Start/End: Original strand, 9078056 - 9078301
Alignment:
| Q |
21 |
tcctaaggttatgcatatgtaacactcatctactcggttaaagtataatcgaaaaccaaattatttggaataatggaatcaaataattatttgggattaa |
120 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9078056 |
tcctaaggttattcaaatgtaacactcatctactaggttaaagtataatccaaaaccaaattatttggaataattgaatcaaataattatttgggattaa |
9078155 |
T |
|
| Q |
121 |
tattatcatacctgttgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtgtctaaaagaagattctctggctgcaaaatatagg |
220 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9078156 |
tataatcatacctgctgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtatctaaaagaagattctctggctgcaaaatatagg |
9078255 |
T |
|
| Q |
221 |
gagtaatattcttttgattaact-aaacataagaaagagtaaaaat |
265 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
9078256 |
gagtaatattcttttgattaactaaaacttaagaaagagtaaaaat |
9078301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University