View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_high_2 (Length: 767)
Name: NF14757_high_2
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 18 - 753
Target Start/End: Original strand, 30256198 - 30256917
Alignment:
| Q |
18 |
ctttactttgccggttcgactttaattgtttctgttagataaaacttttataactataacattaataacattagattgaatgtaagtgtattggactatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30256198 |
ctttactttgccggttcgactttaattgtttctgttagataaaacttttataactataacattaataacattagattgaatgtaagtgtattggactatg |
30256297 |
T |
|
| Q |
118 |
taagtaatcagaaggattatgagattaaggctttgttgttgtactgtgttttacaggaaaatggagactgcaatattcaacagcaacggaaacatgacga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30256298 |
taagtaatcagaaggattatgagattaaggctttgttgttgtactgtgttttacaggaaaatggagactgcaatattcaacagcaacggaaacatgacga |
30256397 |
T |
|
| Q |
218 |
ttatgctttctctttagctggaagtggtgagcatctttttgtgttaaattaactttggaatgaatgnnnnnnnnnctgtaataattttatgcacactttt |
317 |
Q |
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| T |
30256398 |
ttatgctttctctttagctggaagtggtgagcatctttttgtgttaaattaactttggaatgaatgaaaaaaaaactgtaataattttatgcacactttt |
30256497 |
T |
|
| Q |
318 |
ctgagttgttctgtagtagctagtaaggattttgaagagcagaaagcattcaactatgatgaagagaaagggaaaggaaagcaagaaaagagaagtctta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30256498 |
ctgagttgttctgtagtagctagtaaggattttgaagagcagaaagcattcaactatgatgaagagaaagggaaaggaaagcaagaaaagagaagtctta |
30256597 |
T |
|
| Q |
418 |
tgagcaatgacatagaagaagatgactacctgtaacttttcttctctcaaatactctatcaacgattcaacgctatgaaactatttacattagaaattta |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| |
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| T |
30256598 |
tgagcaatgacatagaagaagatgactacctgtaacttttcttctctcaaatactcta--------tcaacgctatgaaactatgtaca--------tta |
30256681 |
T |
|
| Q |
518 |
gaatgcattttcttcttctcaactcttacttaagatgtttctttcttctgttattatgatcttgcaggctggctgagtcaaggcaaccattatggcgcaa |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30256682 |
gaatgcattttcttcttctcaactcttacttaagatgtttctttcttctgttattatgatcttgcaggctggctgagtcaaggcagccattatggcgcaa |
30256781 |
T |
|
| Q |
618 |
agtaccaatagcttcgagcctaatcaatccatatcgcatagtcattgtcatgcgtcttgttgtcctagttttcttcttccactttcgcatcacaactccg |
717 |
Q |
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| T |
30256782 |
agtaccaatagcttcgagcctaatcaatccatatcgcatagtcattgtcatgcgtcttgttgtcctagttttcttcttccactttcgcatcacaactccg |
30256881 |
T |
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| Q |
718 |
gtgcacgacgcatttgccttatggataatctctgtg |
753 |
Q |
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| T |
30256882 |
gtgcacgacgcatttgccttatggataatctctgtg |
30256917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 587 - 697
Target Start/End: Original strand, 15170478 - 15170588
Alignment:
| Q |
587 |
tggctgagtcaaggcaaccattatggcgcaaagtaccaatagcttcgagcctaatcaatccatatcgcatagtcattgtcatgcgtcttgttgtcctagt |
686 |
Q |
| |
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||||||| |||| |||||||||||||||||||| |||||| | || ||| | || |||||||| || ||||| ||| ||||| | ||||| |||||| |
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| T |
15170478 |
tggctgaagcaagacaaccattatggcgcaaagttccaataccatcaagcttgataaatccataccgaatagtaattatcatgagacttgtaatcctagc |
15170577 |
T |
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| Q |
687 |
tttcttcttcc |
697 |
Q |
| |
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|||||||||| |
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| T |
15170578 |
attcttcttcc |
15170588 |
T |
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Back To:
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