View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14757_high_23 (Length: 243)
Name: NF14757_high_23
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 44614901 - 44615112
Alignment:
| Q |
20 |
tttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44614901 |
tttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgattgtgttttgttatggcttctgctat |
44615000 |
T |
|
| Q |
120 |
caatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgacttaaatattatttattagcacaattattcacccacttat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44615001 |
caatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgacttaaatattctttattagcacaattattcacccacttat |
44615100 |
T |
|
| Q |
220 |
gcctttgctact |
231 |
Q |
| |
|
||||||| |||| |
|
|
| T |
44615101 |
gcctttgttact |
44615112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 44793668 - 44793457
Alignment:
| Q |
20 |
tttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44793668 |
tttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgattgtgttttgttatggcttctgctat |
44793569 |
T |
|
| Q |
120 |
caatttaataatgtaataaatcctccaaacataacaaagaattataagagtcatcagtgacttaaatattatttattagcacaattattcacccacttat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44793568 |
caatttaataatgtaataaatcctccaaacataacaaagaattttaagagtcatcagtgacttaaatattctttattagcacaattattcacccacttat |
44793469 |
T |
|
| Q |
220 |
gcctttgctact |
231 |
Q |
| |
|
||||||| |||| |
|
|
| T |
44793468 |
gcctttgttact |
44793457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 44789743 - 44789646
Alignment:
| Q |
57 |
gtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctatcaatttaataatgtaataaatcctccaaacataacaa |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44789743 |
gtaataaatggaattttgttaaaactttagtgtgtgactgtgctt--ttatggcttctgct-tcaatttaataatgtaatacatcctccaaacataacaa |
44789647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 44783472 - 44783372
Alignment:
| Q |
19 |
atttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgcta |
118 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44783472 |
atttttgtattgaaatcttctgctatcgagttaataatgtaataaatggacttctgttaaaactttagtgtgtgactaggttttgttatggcttctgcta |
44783373 |
T |
|
| Q |
119 |
t |
119 |
Q |
| |
|
| |
|
|
| T |
44783372 |
t |
44783372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 44146869 - 44146980
Alignment:
| Q |
20 |
tttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaattttgttaaaactttagtgtgtgactgtgttttgttatggcttctgctat |
119 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| |||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
44146869 |
tttttgtatggaaatcttctgccatcgagttaataatgtaatagatggagttttgttaaaattttagtgcttgactgtgttttgttatggcttctgttat |
44146968 |
T |
|
| Q |
120 |
caatttaataat |
131 |
Q |
| |
|
| | |||||||| |
|
|
| T |
44146969 |
cgagttaataat |
44146980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 44789813 - 44789760
Alignment:
| Q |
20 |
tttttgtatggaaatcttctgctatcatgttattaatgtaataaatggaatttt |
73 |
Q |
| |
|
|||||||||| ||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
44789813 |
tttttgtatgaaaatcttctgctatcgagtgattaatgtaataaatggattttt |
44789760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 44614840 - 44614876
Alignment:
| Q |
70 |
ttttgttaaaactttagtgtgtgactgtgttttgtta |
106 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
44614840 |
ttttgttaaaactttagtgtttgattgtgttttgtta |
44614876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University