View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_high_3 (Length: 529)
Name: NF14757_high_3
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 17 - 515
Target Start/End: Complemental strand, 1721177 - 1720679
Alignment:
| Q |
17 |
aatccaatggtacacttgagttgaaaacttctctatttaaacattcttcttgttagatgcatatatacttggcctgatcaaataatgagtgataaattaa |
116 |
Q |
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| T |
1721177 |
aatccaatggtacacttgagttgaaaacttctctatttaaacattcttcttgttagatgcatatatacttgccctgatcaaataatgagtgataaattaa |
1721078 |
T |
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| Q |
117 |
aagccaaaagaaacaaaaacagtgttaccagaaataacactaacggtacttgcttaaattatcataagttacttagctcaacttcaatgcatactggtgg |
216 |
Q |
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| T |
1721077 |
aagccaaaagaaacaaaaacagtgttaccagaaataacactaacggtacttgcttaaattatcataagttacttagctcaacttcaatgcatactggtgg |
1720978 |
T |
|
| Q |
217 |
nnnnnnncttgcttgcagtgattgcaaacgagagtttttagtgttcacagaaacaactatgtaccgttgcaacaaatgcgaaggtgttagtaaatcaatt |
316 |
Q |
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| T |
1720977 |
aaaaaaacttgcttgcagtgattgcaaacgagagtttttagtgtctacaaaaacaactatgtaccgttgcaacaaatgcgaaggtgttagtaaatcaatt |
1720878 |
T |
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| Q |
317 |
tcaggttataaacaattcagagaaaatagtttaagagccaaattcttcaaccaagatcgacaacaaaatgctagtaaaaatgcatcaagccattcctctt |
416 |
Q |
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| T |
1720877 |
tcaggttataaacaattcagagaaaatagtttaagagccaaattcttcaaccaagatcgacaacaaaatgctagtaaaaatgcatcaagccattcctctt |
1720778 |
T |
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| Q |
417 |
tgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatg |
515 |
Q |
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| T |
1720777 |
tgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatg |
1720679 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 515
Target Start/End: Original strand, 18372697 - 18372872
Alignment:
| Q |
340 |
aaatagtttaagagccaaattcttcaaccaagatcgacaacaaaatgcta--gtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaa |
437 |
Q |
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| T |
18372697 |
aaatagtttagaagctgaattgttcaaccaagatcaactacacagtgctatagcacaaatgcatcaggccattcctcgtcgttgttgtctacaacaatca |
18372796 |
T |
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| Q |
438 |
tcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatg |
515 |
Q |
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| T |
18372797 |
cccgtaacaagcacatggttctatgtggagtaacttgcag-cgaagatgttacaagctcaa-ggaaccattaatgatg |
18372872 |
T |
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