View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_high_4 (Length: 517)
Name: NF14757_high_4
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 8 - 499
Target Start/End: Original strand, 41307425 - 41307913
Alignment:
| Q |
8 |
gtagcataggttttgttgtttctgtagcattatatggttctcctcttgttgcaatggtgagtcactcatttttccttccattcataattttacattaaca |
107 |
Q |
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| T |
41307425 |
gtagcataggtttagttgtttctgtagcattatatggttctcctcttgttgcaatggtgagtcactcatttttccttccattcataattttacattaaca |
41307524 |
T |
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| Q |
108 |
tttttagtccgtctatgtttgatatcataccgtgactctggcacgctaacggtgatatcaaacatagactaacaatcgccaacaacaaaagcatcatgtt |
207 |
Q |
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| T |
41307525 |
tttttagtctgtctatgtttgatatcataccgtgattctggcacgctcacggtgatatcaaacatagattaacaatcgtcaacaacaaaagcatgatgtt |
41307624 |
T |
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| Q |
208 |
gtaaacttgtaattagatggtaataacaaagttatattttgatttttgcagaagaaagtgatacaaacaaagagtgtggaattcatgccactaccattat |
307 |
Q |
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| T |
41307625 |
gtaaacttgtaattagatggtaa---caaagttatattttgatttttgcagaagaaagtgatacaaacaaagagtgtggaattcatgccactaccattat |
41307721 |
T |
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| Q |
308 |
ctttgtgtgctttttcagctagtgtattctggttagcttatggaatccttgttcgtgatgtatttgttgcggtttgtttcttaatcatacataatctcat |
407 |
Q |
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| T |
41307722 |
ctttgtgtgctttttcagctagtgtattctggttagcttatggaatccttgttcgtgatgtatttgttgcggtttgtttcttaatcatacataatctcat |
41307821 |
T |
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| Q |
408 |
taattaatctaagaaaaattagttaaatagacatactaatattgtttttcttaatttttggtaatatgattacagggtcctagtctggttgg |
499 |
Q |
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| T |
41307822 |
taattaatctaagaaaaattagttaaatagaaatactaatattgtttttcttaatttttggtactatgattacagggtcctagtctggttgg |
41307913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 245 - 388
Target Start/End: Original strand, 41297764 - 41297907
Alignment:
| Q |
245 |
tttgatttttgcagaagaaagtgatacaaacaaagagtgtggaattcatgccactaccattatctttgtgtgctttttcagctagtgtattctggttagc |
344 |
Q |
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| T |
41297764 |
tttgatttttgcagaagaaagttatagaaacaaagagtgttgaattcatgccactaccattatccttgtgtgctttctcagctagtgcttgttggttagt |
41297863 |
T |
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| Q |
345 |
ttatggaatccttgttcgtgatgtatttgttgcggtttgtttct |
388 |
Q |
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| T |
41297864 |
ttatggaatccttgttcgtgatgtatttgttgcggttagtttct |
41297907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 41297610 - 41297671
Alignment:
| Q |
10 |
agcataggttttgttgtttctgtagcattatatggttctcctcttgttgcaatggtgagtca |
71 |
Q |
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| T |
41297610 |
agcataggtttaggtgtttctgttgcattgtatggttctcctcttgttgcaatggtgagtca |
41297671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 253 - 384
Target Start/End: Complemental strand, 9610738 - 9610607
Alignment:
| Q |
253 |
ttgcagaagaaagtgatacaaacaaagagtgtggaattcatgccactaccattatctttgtgtgctttttcagctagtgtattctggttagcttatggaa |
352 |
Q |
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| T |
9610738 |
ttgcagaaaaaagtgatacaaacaaagagtgtggaattcatgccactacctttatcattgtgttcattcttggctagtgtattgtggcttacttatggac |
9610639 |
T |
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| Q |
353 |
tccttgttcgtgatgtatttgttgcggtttgt |
384 |
Q |
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| T |
9610638 |
ttctcattagggatatattcgttgcggtttgt |
9610607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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