View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14757_high_5 (Length: 495)

Name: NF14757_high_5
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14757_high_5
NF14757_high_5
[»] scaffold0205 (1 HSPs)
scaffold0205 (1-479)||(17757-18235)


Alignment Details
Target: scaffold0205 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 17757 - 18235
Alignment:
Q  1 tgatgtagctgaagttaagtcttctgtaatttggcaatgttcgctatctgctatgccttgtaatgcagaaacaacctgaaattttgccaaatgtacaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17757 tgatgtagctgaagttaagtcttctgtaatttggcaatgttcgctatctgctatgccttgtaatgcagaaacaacctgaaattttgccagatgtacaatt 17856  T
Q  101 ttatcttgcaaagaaatcgaaacgagtcacttcacttctctnnnnnnntcattaaaagtcgaagcacgcctacttaatcatgaaattaaagtcattatct 200  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||  |||||||||||||||||||||||||||||||| |||||||||    
T  17857 ttatcttgcaaagaaatcgaaacgagtcacttcacttctctaaaaaaatcattaaagatcgaagcacgcctacttaatcatgaaattaaactcattatct 17956  T
Q  201 acacgtatagtttatgttcagacaaaaataaaccaagtctgctttacatgagagattttattcattgtaaaatcattttttgtacttcgcttaatagtta 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17957 acacgtatagtttatgttcagataaaaataaaccaagtctgctttacatgagagattttattcattgtaaaatcattttttgtacttcgcttaatagtta 18056  T
Q  301 ttttttattcaagcaggtactagatactacagcggatgtattatcacatctcttctgtctgaagtttgaactttttgaatgacatatcgtagtaaatggg 400  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  18057 ttttttattcaagcaggtactagatattacagcggatgtattatcacgtctcttctgtctgaagtttgaactttttgtttgacatatcgtagtaaatggg 18156  T
Q  401 gcttaccatgttcatggaaaatctttccttaggcttctttttgagacattgtgctattacttttaccaaccagcgaagt 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18157 gcttaccatgttcatggaaaatctttccttaggcttctttttgagacattgtgctattacttttaccaaccagcgaagt 18235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University