View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_low_10 (Length: 376)
Name: NF14757_low_10
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 76 - 360
Target Start/End: Complemental strand, 8280393 - 8280120
Alignment:
| Q |
76 |
ttatgtagtagaagttgcttgtcgattaatttgaagcaagagcttccacaagagtaaaaacagcagatatagggtttccaaaaatagctgaaaatagtag |
175 |
Q |
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| T |
8280393 |
ttatgtagtagaagttgcttgtcgattaatttgaagcaagag------------taaaaacagcagatatagggtttccaaaaatagctgaaaatagtag |
8280306 |
T |
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| Q |
176 |
cttgaacaccacaatagctatctttgtgtacttgctcatagttcttgctctccttgaccgtgtgagaacaagttgagcttccctatctccttcagaaaaa |
275 |
Q |
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| T |
8280305 |
cttgaaaatcacaacagctatctttgtgtacttgctcatagtccttgttcttcttgaccgtgtgagaacaagttgagcttctctatctccttcagaaaaa |
8280206 |
T |
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| Q |
276 |
taacccatcc-ccaattctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccatccttg |
360 |
Q |
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| T |
8280205 |
taacccatcctccaattctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccatccttg |
8280120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 104 - 231
Target Start/End: Original strand, 8261952 - 8262079
Alignment:
| Q |
104 |
atttgaagcaagagcttccacaagagtaaaaacagcagatatagggtttccaaaaatagctgaaaatagtagcttgaacaccacaatagctatctttgtg |
203 |
Q |
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|||| ||||||||||||||| |||| || || |||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
8261952 |
attttaagcaagagcttccaatagagcaacaaaagcagatacaggatttccaaaaatagctgaaaatattagcttgaacaccacaacagctatctttgtg |
8262051 |
T |
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| Q |
204 |
tacttgctcatagttcttgctctccttg |
231 |
Q |
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| T |
8262052 |
tacttgcttatagtcctttctctacttg |
8262079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 360
Target Start/End: Original strand, 8262165 - 8262269
Alignment:
| Q |
257 |
cctatctccttcagaaaaataacccatcc-ccaattctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccat |
355 |
Q |
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||||||||||| ||||||||||||| || ||| |||| ||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
8262165 |
cctatctccttgagaaaaataaccccccctccagttctcaagtatcaaagccttgaaacaagacacatgataactagaatttccatcataataagaccac |
8262264 |
T |
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| Q |
356 |
ccttg |
360 |
Q |
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||||| |
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| T |
8262265 |
ccttg |
8262269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 8322772 - 8322698
Alignment:
| Q |
286 |
ccaattctgaagaatcaaatccttgaaacaagacacatgatagcaagaatttccatcataataagaccatccttg |
360 |
Q |
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|||||| | ||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |
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| T |
8322772 |
ccaattatcaagtatcaaagccttgaaacaagacacatgataactagaatttccatcataataagaccacccttg |
8322698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 8322994 - 8322908
Alignment:
| Q |
101 |
ttaatttgaagcaagagcttccacaagagtaaaaacagcagatatagggtttccaaaaatagctgaaaatagtagcttgaacaccac |
187 |
Q |
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|||||||||||||| | |||||| || |||| || | ||||||||| |||||||||||||||||||||| ||| |||||| |||| |
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| T |
8322994 |
ttaatttgaagcaataacttccagaatagtagtaaaaaaagatataggatttccaaaaatagctgaaaatattagtttgaacgccac |
8322908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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