View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_low_11 (Length: 355)
Name: NF14757_low_11
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 338
Target Start/End: Original strand, 24399003 - 24399327
Alignment:
| Q |
14 |
ggacaaaaatagtataaaatgaaaacagcgttgacatttttagtatttgaatgctgaatttcaatcaatgataaagactaggattgaattctcaagagac |
113 |
Q |
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| T |
24399003 |
ggacaaaaatagcataaaatgaaaacagcgtcgacatttttagtatttgaatgctgaatttcaatcaatgataaagactaggattgaattctcaagagac |
24399102 |
T |
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| Q |
114 |
aagagagacaaacctatccaagaaaagggacaaaaatagtatagaatgaaaattgtattgacatatttagtatttgcattatgaatttcagtcaatgatt |
213 |
Q |
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| T |
24399103 |
aagagagacaaacctatccaagaaaagggacaaaaatagtatagaatgaaaatcgtattgacatatttagtatttgcattatgaatttcagtcaatgatt |
24399202 |
T |
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| Q |
214 |
atttgggtttgagatcattccggagataaatgagaacaataacttaaacaataaaatttcttctactaaattttttaatgtggttggagattgagagacc |
313 |
Q |
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| T |
24399203 |
atttgggtttgagatcattccggagataaatgagaacaataacttaaacaataaaatttcatctactaaattttttaatgtggttggagattgagagacc |
24399302 |
T |
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| Q |
314 |
caataacatttctctaagcattcac |
338 |
Q |
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| T |
24399303 |
caataacatttctctaagcattcac |
24399327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 212
Target Start/End: Original strand, 24398911 - 24399074
Alignment:
| Q |
44 |
ttgacatttttagtatttgaatgctgaatttcaatcaatgataaagactaggattgaattctcaagagacaagagagacaaacctatccaagaaaaggga |
143 |
Q |
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| T |
24398911 |
ttgacatttttagcatttgcattttgattgtcaatcaatgataaggactaggattgaattctcatgtgacatgagaggc-----tatccaagaaaaggga |
24399005 |
T |
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| Q |
144 |
caaaaatagtatagaatgaaaattgtattgacatatttagtatttgcattatgaatttcagtcaatgat |
212 |
Q |
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| T |
24399006 |
caaaaatagcataaaatgaaaacagcgtcgacatttttagtatttgaatgctgaatttcaatcaatgat |
24399074 |
T |
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