View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_low_12 (Length: 349)
Name: NF14757_low_12
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_low_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 28885047 - 28884711
Alignment:
| Q |
14 |
gaatcaacattgatcaagtcactaactctaaggatgtggagaactaaaaacttctactttaatagatcaatcgaaattttgaacaatttt-aagcatcaa |
112 |
Q |
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| T |
28885047 |
gaatctacattgatcaagtcactaactctaaggatgtggagaactaaaaacttctactttaatagatcaattgaaattttgaacaatttttaagcatcag |
28884948 |
T |
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| Q |
113 |
ttgattatagatcacatgtgacacttctccacctcaacaatttcttatattatgaccaaatagcaaaacacacttttgtgtcttttgtttattgatggca |
212 |
Q |
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| T |
28884947 |
ttgactatagatcacatgtgacacttctccacctcaacaatttcttatattatgatcaaatagcaaaacacacttttgtgtcttttgtttattgatggcg |
28884848 |
T |
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| Q |
213 |
agattgtcaatattgtggtgagtcaatgtgattttgtcaaaacctacattttgtagcttcaacaaaagcaccgtaaatttatgaaattcaccgccaaacc |
312 |
Q |
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| T |
28884847 |
gtattgtcaatattgtggtgagtcaatgtgattttgccaaaacctacattttgtagcttcaaaaaaagcaccgtaaatttatgaaattcaccgccaaacc |
28884748 |
T |
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| Q |
313 |
aaacatatgattatagattctccgcagttagaatatt |
349 |
Q |
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| T |
28884747 |
aaacatatgattatagattctccgcagttagaatatt |
28884711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 281
Target Start/End: Complemental strand, 28880250 - 28880044
Alignment:
| Q |
76 |
tagatcaatcgaaattttgaacaattttaa-gcatcaattgattatagatcacatgtgacacttctccacctc-aacaatttcttatattatgaccaaat |
173 |
Q |
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| T |
28880250 |
tagatcaatcaaaattttgaacaatttttacgcatcg-ttcattattgaccacatgtgacacttctccacccccaacgatttcttgtaccataaccaaat |
28880152 |
T |
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| Q |
174 |
agcaaaacacacttttgtgtcttttgtttattgatggcaagattgtcaatattgtggtgagtcaatgtgattttgtcaaaacctacattttgtagcttca |
273 |
Q |
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| T |
28880151 |
agtaaaacacatttttgtgtcttatatttattgacggtgatattgtccaattggcggtgagccattgtgagtttgtcagaaactatattttgtagcttca |
28880052 |
T |
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| Q |
274 |
acaaaagc |
281 |
Q |
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| T |
28880051 |
acaaaagc |
28880044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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