View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_low_13 (Length: 348)
Name: NF14757_low_13
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 170 - 329
Target Start/End: Complemental strand, 8891739 - 8891580
Alignment:
| Q |
170 |
ttgaagtggtgcaacgtaaccaacaaaacagtactccaacggtagttgacgacacaatctacgttatggcaaagccacaaacaaagaagactattcctcc |
269 |
Q |
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| T |
8891739 |
ttgaagtggtgcaacgtaaccagcaaaacagtactccaacggcagttgacgacacaatctacgttatggcaaagccacaaacaaagaagaataatcctcc |
8891640 |
T |
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| Q |
270 |
aaaggatcccgacgaaggaagcagtagtcgttcctcttgccattgaggaagcaagagagg |
329 |
Q |
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| T |
8891639 |
agaggatcccgacgaaggaagcagtagtcgttcctcttaccgttgaggaagcaagagagg |
8891580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 8892755 - 8892624
Alignment:
| Q |
43 |
ttagcatgttagaaaagtttgtaatgatggatattttctaaaagattaattaacaaaattaagatatatttcattgaagggtgaaatggatacaaatgaa |
142 |
Q |
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| T |
8892755 |
ttagcatgttagaaaagtttgtaatgatggatattttctaaaagattaattaactaaattaagatatatttcattgaagggtgaaatggatacaaatgaa |
8892656 |
T |
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| Q |
143 |
aatattacaattgcattagttaatattttgaa |
174 |
Q |
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| T |
8892655 |
aatattacaattgcattagataatattttgaa |
8892624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 8892940 - 8892864
Alignment:
| Q |
43 |
ttagcatgttagaaaagtttgtaatgatggatattttctaaaagattaattaacaaaattaagatatatttcattga |
119 |
Q |
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| T |
8892940 |
ttagcatgttagaaatttttttaattatgaatattttctaaaagattaattaactaaagtaaaatatatttcattga |
8892864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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