View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_low_15 (Length: 326)
Name: NF14757_low_15
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 28 - 308
Target Start/End: Original strand, 21074196 - 21074462
Alignment:
| Q |
28 |
cagagaccaaggtaaaggataataatacctctattgacattgaagagaagaagaacaataatgaaggtgaaaccgtgagagaacgaagccataatgaatt |
127 |
Q |
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| T |
21074196 |
cagagaccaaggtaaaggataataatacctctattgacattgaagagaagaagaacaataatgaaggtgaaaccgtgagagaaccaagccatattgaatt |
21074295 |
T |
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| Q |
128 |
gaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttcttatttag |
227 |
Q |
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| T |
21074296 |
gaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaaga-------------tgaaaccaattagtctttcattttcttatttag |
21074382 |
T |
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| Q |
228 |
gtgatttgaactcattgttctannnnnnnagggtgtttgttccgttcaaaacaattgatttcttttttccaagatatatat |
308 |
Q |
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| T |
21074383 |
gtgatttgaactcattgttctattttattagggtgtttgttctgttcaaagaaactgatttgtttttt-caagatatatat |
21074462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 56 - 246
Target Start/End: Original strand, 21078929 - 21079119
Alignment:
| Q |
56 |
ctctattgacattgaagagaagaagaacaataatgaaggtgaaaccgtgagagaacgaagccataatgaattgaaggcagatagagttgttatgaatttt |
155 |
Q |
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| T |
21078929 |
ctctattgacattgaagaaatgaagaaaaataatgaaggtgaatcagggagagagcagagtcataatgaattgaagtcagaaaaagttgttaggaatttt |
21079028 |
T |
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| Q |
156 |
gatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttcttatttaggtgatttgaactcattgtt |
246 |
Q |
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| T |
21079029 |
gatttgaacgagcttccaacaaatggtgttgcagatgaatgtgttcaactggtctttcattttctaatttaggtgatttgaactcattgtt |
21079119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 21155264 - 21155140
Alignment:
| Q |
119 |
taatgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcatttt |
218 |
Q |
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||||||||||||| || | ||||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||||||| ||| |||||| | |
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| T |
21155264 |
taatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaactgaagatgttgcacatgaatgaaaccaattggtc-ttcattgt |
21155166 |
T |
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| Q |
219 |
cttatttaggtgatttgaactcattg |
244 |
Q |
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| T |
21155165 |
cttatttaggtcatttaaactcattg |
21155140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 21160779 - 21160655
Alignment:
| Q |
122 |
tgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttctt |
221 |
Q |
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|||||||||| || | ||||||||||||||||||||||||||||| |||||| |||||||| ||||||| | ||||||||| |||||||||| |||| |
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| T |
21160779 |
tgaattgaagccaaaaggagttgttatgaattttgatttgaatgagtttccaacagaagatgtttcagatgaataaaaccaattggtctttcattgtctt |
21160680 |
T |
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| Q |
222 |
atttaggtgatttgaactcattgtt |
246 |
Q |
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|||||| |||||||||||||||| |
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| T |
21160679 |
ggttaggtcatttgaactcattgtt |
21160655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 27738872 - 27738762
Alignment:
| Q |
139 |
gagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttcttatttaggtgatttgaac |
238 |
Q |
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||||||||||||||||||||||||||| | ||||||| |||||||| || |||| ||||||||||| |||||||||| |||||||||||| |||||||| |
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| T |
27738872 |
gagttgttatgaattttgatttgaatgcgcttccaatagaagatgtttcacatgaatgaaaccaattggtctttcattgtcttatttaggtcatttgaac |
27738773 |
T |
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| Q |
239 |
tcattgttcta |
249 |
Q |
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||||||||||| |
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| T |
27738772 |
tcattgttcta |
27738762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 27731857 - 27731727
Alignment:
| Q |
119 |
taatgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcatttt |
218 |
Q |
| |
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||||||||||||| || | ||||||||||||||||||||||||||||| |||||| | ||||| ||| |||| ||||||||||||||||||||| | |
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| T |
27731857 |
taatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaacagaggatgtggcacatgaatgaaaccaattagtctttcatcgt |
27731758 |
T |
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| Q |
219 |
cttatttaggtgatttgaactcattgttcta |
249 |
Q |
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||||||||||| |||| |||||||||||||| |
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| T |
27731757 |
cttatttaggtcattttaactcattgttcta |
27731727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 21249714 - 21249823
Alignment:
| Q |
139 |
gagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttcttatttaggtgatttgaac |
238 |
Q |
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||||||||||||||||||||||||||||| ||| || ||||||||||| |||| ||||||||||| || ||||||| | |||||||||| |||||||| |
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| T |
21249714 |
gagttgttatgaattttgatttgaatgagcttcaaacagaagatgttgcacatgaatgaaaccaattggtttttcattgtattatttaggtcatttgaac |
21249813 |
T |
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| Q |
239 |
tcattgttct |
248 |
Q |
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| |||||||| |
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| T |
21249814 |
taattgttct |
21249823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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