View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14757_low_20 (Length: 303)
Name: NF14757_low_20
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 40 - 278
Target Start/End: Original strand, 43841181 - 43841419
Alignment:
| Q |
40 |
tgggttcattagacaaacttcgttggtaaataaatccattactttatttagagattggaagggtagttaccatctgacatcttggtttggagtagtaggt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43841181 |
tgggttcattagacaaacttcgttggtaaataaatccattaatttatttagagattggaagggtagttaccatctgacatcttggtttggagtagtaggt |
43841280 |
T |
|
| Q |
140 |
ggtatcgttttaataacttcaattctttgtgtttggcagcattaagtgctacctgcaaaatacatgtagagaactgggaagtcagtcaccctctcacact |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43841281 |
ggtatcgttttaataacttcaattctttgtgtttggcagcattaagtgctacctgcaaaatacatgtagagaactgggaagtcagtcaccctctcacact |
43841380 |
T |
|
| Q |
240 |
gcactacactcattttaaatttaaatctttcaaatatat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43841381 |
gcactacactcattttaaatttaaatctttcaaatatat |
43841419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University