View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14757_low_27 (Length: 258)

Name: NF14757_low_27
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14757_low_27
NF14757_low_27
[»] chr1 (1 HSPs)
chr1 (17-245)||(5130464-5130701)
[»] chr5 (9 HSPs)
chr5 (25-81)||(8677636-8677692)
chr5 (17-81)||(1600491-1600555)
chr5 (17-81)||(8535332-8535396)
chr5 (25-81)||(8644043-8644099)
chr5 (17-81)||(9074931-9074995)
chr5 (17-80)||(8528778-8528841)
chr5 (25-78)||(8636701-8636754)
chr5 (37-81)||(8548322-8548366)
chr5 (124-158)||(36551390-36551424)
[»] chr4 (2 HSPs)
chr4 (17-80)||(9442939-9443002)
chr4 (126-158)||(49370040-49370072)
[»] scaffold0627 (1 HSPs)
scaffold0627 (36-81)||(4491-4536)
[»] chr6 (1 HSPs)
chr6 (36-81)||(16716178-16716223)
[»] chr7 (2 HSPs)
chr7 (124-158)||(46355860-46355894)
chr7 (17-81)||(48362065-48362129)
[»] chr3 (2 HSPs)
chr3 (124-158)||(26990456-26990490)
chr3 (124-158)||(53519824-53519858)
[»] chr2 (4 HSPs)
chr2 (124-158)||(2610832-2610866)
chr2 (124-158)||(17429294-17429328)
chr2 (124-158)||(39709205-39709239)
chr2 (124-161)||(33504468-33504505)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 5130701 - 5130464
Alignment:
Q  17 aatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaagtggcttctaaaattttatttacccaaatgaatctg 116  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130701 aatttcactaaaggatattgtgaaaggagacaatattgaggtgctgaatattcactcaaggtaagtggcttctaaaattttatttacccaaatgaatctg 5130602  T
Q  117 atgctccccgaccccacttagtgagatatggcttggtt---------gttgaatctgaggctcccttaaaaatcaatcgtaattagtttgattcataaga 207  Q
    |||||||||||||||||||| |||||||||||||||||         ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5130601 atgctccccgaccccacttaatgagatatggcttggttgttgttgttgttgaatctgaggcttccttaaaaatcaatcgtaattagtttgattcataaga 5130502  T
Q  208 catgtgtgagtttcctacattaccgtactgcctatgct 245  Q
    ||||||||||||||||||||||| |||| |||| ||||    
T  5130501 catgtgtgagtttcctacattactgtaccgcctgtgct 5130464  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 8677692 - 8677636
Alignment:
Q  25 tgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 81  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  8677692 tgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtaag 8677636  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 1600491 - 1600555
Alignment:
Q  17 aatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 81  Q
    ||||||| |||||||| |  ||||||| ||||||||||||||||||||||| |||||||||||||    
T  1600491 aatttcattgaaggatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaag 1600555  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 8535396 - 8535332
Alignment:
Q  17 aatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 81  Q
    ||||||| |||||||| || ||||||| |||||||||||||| |||||||| |||||||||||||    
T  8535396 aatttcattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggtaag 8535332  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 8644099 - 8644043
Alignment:
Q  25 tgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 81  Q
    |||||||| |||||||||||||||||| |||| |||||||||| |||||||||||||    
T  8644099 tgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaag 8644043  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 9074931 - 9074995
Alignment:
Q  17 aatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 81  Q
    ||||||| |||||||| |  |||||||||||||||| |||||||||||||| |||||||||||||    
T  9074931 aatttcattgaaggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaaggtaag 9074995  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 8528841 - 8528778
Alignment:
Q  17 aatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaa 80  Q
    ||||||| |||||||| || ||||||||| |||||||||||| |||||||| ||||||||||||    
T  8528841 aatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 8528778  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 8636754 - 8636701
Alignment:
Q  25 tgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggt 78  Q
    |||||||| | ||||||||||||||||| |||||||||||||| ||||||||||    
T  8636754 tgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 8548322 - 8548366
Alignment:
Q  37 tgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 81  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||    
T  8548322 tgaaaggagacaatattgaggtgctgaatatccactcaaagtaag 8548366  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 36551390 - 36551424
Alignment:
Q  124 ccgaccccacttagtgagatatggcttggttgttg 158  Q
    ||||||||||||||||||||| |||||||||||||    
T  36551390 ccgaccccacttagtgagataaggcttggttgttg 36551424  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 9443002 - 9442939
Alignment:
Q  17 aatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaa 80  Q
    ||||||| |||||||| || ||||||||| |||||||||||| |||||||| ||||||||||||    
T  9443002 aatttcattgaaggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 9442939  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 49370040 - 49370072
Alignment:
Q  126 gaccccacttagtgagatatggcttggttgttg 158  Q
    |||||||||||||| ||||||||||||||||||    
T  49370040 gaccccacttagtgggatatggcttggttgttg 49370072  T

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Target: scaffold0627 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 4536 - 4491
Alignment:
Q  36 gtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 81  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  4536 gtgaaaggagacaatattgaggtgttgaatatccactcaaggtaag 4491  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 16716223 - 16716178
Alignment:
Q  36 gtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 81  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||    
T  16716223 gtgaaaggagagaatattgaggtgttgaatatccactcaaggtaag 16716178  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 46355894 - 46355860
Alignment:
Q  124 ccgaccccacttagtgagatatggcttggttgttg 158  Q
    ||||||||||||||||||||| |||||||||||||    
T  46355894 ccgaccccacttagtgagataaggcttggttgttg 46355860  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 48362065 - 48362129
Alignment:
Q  17 aatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 81  Q
    ||||||| |||||||| |  |||||||||| ||||| |||||| ||||| | |||||||||||||    
T  48362065 aatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaag 48362129  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 26990456 - 26990490
Alignment:
Q  124 ccgaccccacttagtgagatatggcttggttgttg 158  Q
    ||||||||||||||||||||| |||||||||||||    
T  26990456 ccgaccccacttagtgagataaggcttggttgttg 26990490  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 53519824 - 53519858
Alignment:
Q  124 ccgaccccacttagtgagatatggcttggttgttg 158  Q
    ||||||||||||||||||||| |||||||||||||    
T  53519824 ccgaccccacttagtgagataaggcttggttgttg 53519858  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 2610832 - 2610866
Alignment:
Q  124 ccgaccccacttagtgagatatggcttggttgttg 158  Q
    ||||||||||||||||||||| |||||||||||||    
T  2610832 ccgaccccacttagtgagataaggcttggttgttg 2610866  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 17429294 - 17429328
Alignment:
Q  124 ccgaccccacttagtgagatatggcttggttgttg 158  Q
    ||||||||||||||||||||| |||||||||||||    
T  17429294 ccgaccccacttagtgagataaggcttggttgttg 17429328  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 39709239 - 39709205
Alignment:
Q  124 ccgaccccacttagtgagatatggcttggttgttg 158  Q
    |||||||||||||||| ||||||||||||||||||    
T  39709239 ccgaccccacttagtgggatatggcttggttgttg 39709205  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 33504468 - 33504505
Alignment:
Q  124 ccgaccccacttagtgagatatggcttggttgttgaat 161  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  33504468 ccgaccccacttagtgggataaggcttggttgttgaat 33504505  T

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