View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14757_low_33 (Length: 235)

Name: NF14757_low_33
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14757_low_33
NF14757_low_33
[»] chr3 (16 HSPs)
chr3 (51-184)||(54706884-54707015)
chr3 (52-146)||(23514460-23514554)
chr3 (51-146)||(16436524-16436619)
chr3 (51-148)||(44321531-44321627)
chr3 (84-151)||(8923633-8923700)
chr3 (51-146)||(23513688-23513783)
chr3 (84-146)||(41326546-41326608)
chr3 (82-146)||(52103608-52103672)
chr3 (68-123)||(54707754-54707808)
chr3 (70-148)||(34329120-34329198)
chr3 (70-118)||(1773628-1773676)
chr3 (70-148)||(8922882-8922960)
chr3 (70-143)||(1772870-1772943)
chr3 (70-122)||(10991075-10991127)
chr3 (70-146)||(41325822-41325898)
chr3 (84-146)||(50108304-50108363)
[»] chr7 (11 HSPs)
chr7 (52-141)||(45431064-45431153)
chr7 (52-148)||(45431788-45431884)
chr7 (59-136)||(22492483-22492560)
chr7 (51-146)||(32249345-32249440)
chr7 (52-147)||(32250091-32250186)
chr7 (88-146)||(48204147-48204205)
chr7 (70-146)||(18923434-18923510)
chr7 (84-148)||(23752805-23752869)
chr7 (54-120)||(32492585-32492651)
chr7 (51-120)||(7705815-7705884)
chr7 (69-122)||(48204964-48205017)
[»] chr1 (6 HSPs)
chr1 (51-146)||(27890568-27890663)
chr1 (51-146)||(49400260-49400355)
chr1 (51-143)||(49399549-49399641)
chr1 (51-146)||(27891260-27891355)
chr1 (84-149)||(49385082-49385147)
chr1 (70-146)||(49385775-49385851)
[»] chr4 (6 HSPs)
chr4 (51-146)||(52238283-52238378)
chr4 (51-146)||(55633554-55633649)
chr4 (51-148)||(52237633-52237730)
chr4 (84-147)||(5469970-5470033)
chr4 (51-144)||(53327458-53327551)
chr4 (51-140)||(48957429-48957518)
[»] chr2 (6 HSPs)
chr2 (51-146)||(33361047-33361142)
chr2 (51-146)||(20267165-20267260)
chr2 (51-146)||(20268963-20269058)
chr2 (54-120)||(41992700-41992765)
chr2 (55-135)||(41993326-41993406)
chr2 (82-146)||(41282634-41282697)
[»] chr8 (4 HSPs)
chr8 (52-146)||(17626323-17626416)
chr8 (51-147)||(17625633-17625729)
chr8 (70-146)||(38443034-38443110)
chr8 (100-146)||(38443621-38443667)
[»] chr5 (3 HSPs)
chr5 (52-146)||(129329-129423)
chr5 (51-144)||(128663-128756)
chr5 (70-147)||(31600447-31600524)
[»] chr6 (2 HSPs)
chr6 (70-146)||(3295789-3295865)
chr6 (84-145)||(28548402-28548463)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 54707015 - 54706884
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcgtta 150  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||| |||||||||    
T  54707015 aatttcaaccgttggatattattttgacatgtgtcacacatccatgatcgtaaatgggataaatgga--aaatgcaaatggagtaaagatagactcgtta 54706918  T
Q  151 aaatgacactcaataatttctttatgaacccttt 184  Q
    ||||||||||||||||||| ||||||||||||||    
T  54706917 aaatgacactcaataatttgtttatgaacccttt 54706884  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 23514460 - 23514554
Alignment:
Q  52 atttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||||||| |||||| ||||| ||| | ||||||||||||||| ||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  23514460 atttcaaccgttagatatttttttgccacatgtcacacatccatgatagtaaatggggtaaattgagcaaaggcaaatggagcaaagatggactc 23514554  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 16436619 - 16436524
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||||||||| |||| ||||||| ||  | ||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  16436619 aatttcaaccgtttgatactattttgccatatgtcacacatccatgatggtaaatgggataaattgagcaaaggcaaacggagcaaagatggactc 16436524  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 44321531 - 44321627
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcgt 148  Q
    |||||||||| ||| ||||| |||| |||||| ||||||||| ||||  ||||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  44321531 aatttcaaccattgaatattcttttaacacgtgtcacacatcaatgaaggtaaatggg-taaattgagcaaaagcaaatggagcaaagatggactcgt 44321627  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 8923633 - 8923700
Alignment:
Q  84 tcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcgttaa 151  Q
    ||||||||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||| ||||    
T  8923633 tcacacatccatgatggtaaatggggtaaatggagcaaacccaaatggagcaaagatggactccttaa 8923700  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 23513783 - 23513688
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||||| || ||||||  |||||||||| |||  ||||||||||  |||||||||||||| |||||||   |||||||||||||||||||||    
T  23513783 aatttcaaccattagatattcctttgacacgtgtcatgcatccatgatgataaatgggataaattgagcaaagataaatggagcaaagatggactc 23513688  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 41326546 - 41326608
Alignment:
Q  84 tcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||||||||||| |||||| || |||||||||||||  ||||||||||||||||||||||    
T  41326546 tcacacatccatgatggtaaattgggtaaatggagcaaacccaaatggagcaaagatggactc 41326608  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 52103672 - 52103608
Alignment:
Q  82 tatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||||||||||||| ||||||||| |||||||||||||   ||||| |||||||||||||||    
T  52103672 tatcacacatccatgatagtaaatggggtaaatggagcaaacctaaatgaagcaaagatggactc 52103608  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 54707754 - 54707808
Alignment:
Q  68 attattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaat 123  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  54707754 attattttgacacgtgtcacagatc-atgatcgtaaatgggataaatggagcaaat 54707808  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 34329120 - 34329198
Alignment:
Q  70 tattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcgt 148  Q
    ||||||| ||| | ||||||||||||||| ||||||||  ||||| |||||||   ||||| |||||||||||||||||    
T  34329120 tattttgtcacatgtcacacatccatgatagtaaatggagtaaattgagcaaaaataaatgaagcaaagatggactcgt 34329198  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 1773628 - 1773676
Alignment:
Q  70 tattttgacacgtatcacacatccatgatcgtaaatgggataaatggag 118  Q
    ||||||| ||| ||||||||||| ||||| |||||||||||||||||||    
T  1773628 tattttgccacatatcacacatctatgatggtaaatgggataaatggag 1773676  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 8922960 - 8922882
Alignment:
Q  70 tattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcgt 148  Q
    ||||||| ||| | |||||||||||||||  |||||||| ||||| |||||||   |||||||| ||||||| ||||||    
T  8922960 tattttgccacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatgaactcgt 8922882  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 1772943 - 1772870
Alignment:
Q  70 tattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatgga 143  Q
    ||||||| ||| | ||||| ||||||||| ||||||||| ||||| |||||||   |||||||||||| |||||    
T  1772943 tattttgccacatgtcacatatccatgatagtaaatggggtaaattgagcaaacttaaatggagcaaatatgga 1772870  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 10991075 - 10991127
Alignment:
Q  70 tattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaa 122  Q
    ||||||| ||| | ||||||||| ||||| ||||||||| |||||||||||||    
T  10991075 tattttgccacatgtcacacatctatgatggtaaatggggtaaatggagcaaa 10991127  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 41325898 - 41325822
Alignment:
Q  70 tattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||| ||| | |||||||||||||||  |||||||| ||||| |||||||   |||||||| ||||||| ||||    
T  41325898 tattttgccacatgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatgaactc 41325822  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 50108304 - 50108363
Alignment:
Q  84 tcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||||||||   |||||| || |||||||||||||  ||||||||||||||| ||||||    
T  50108304 tcacacatccatg---gtaaattgggtaaatggagcaaacccaaatggagcaaagacggactc 50108363  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 45431153 - 45431064
Alignment:
Q  52 atttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatg 141  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| |||||||  |||||||||||||||||    
T  45431153 atttcaaccgttggatattattttaacacgtgtcacacatccatgatggtaaatgggataaattgagcaaagacaaatggagcaaagatg 45431064  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 45431788 - 45431884
Alignment:
Q  52 atttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcgt 148  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||| |||||||    
T  45431788 atttcgaccattggatattattttaacacgtatcacacatccatgatggtaaatgagttaaatggagcaaaggcaaatggagcaaagattgactcgt 45431884  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 22492483 - 22492560
Alignment:
Q  59 ccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaa 136  Q
    |||||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  22492483 ccgttggatattattttagcacgtgtcacacatccatgatggtaaatgggataaatggagcaaaggcaaatggagcaa 22492560  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 32249440 - 32249345
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||||| ||||||||| |||| ||| || ||||||||| ||||  | ||||||| ||||| || |||| ||||||||| |||||||||||||    
T  32249440 aatttcaaccattggatattcttttaacaagtgtcacacatctatgaaaggaaatggggtaaattgaacaaaggcaaatggaacaaagatggactc 32249345  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 32250091 - 32250186
Alignment:
Q  52 atttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcg 147  Q
    ||||||||||||||||||||||||| ||| | |||| ||||  |||| ||||||| | | ||| ||||||| | |||||||||||||||| |||||    
T  32250091 atttcaaccgttggatattattttgtcacatgtcacgcatctgtgatagtaaatgaggtgaattgagcaaaggtaaatggagcaaagatgaactcg 32250186  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 48204205 - 48204147
Alignment:
Q  88 acatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||||||| |||||| ||||||||||||||||   |||||||||||||||||||||    
T  48204205 acatccatgatggtaaataggataaatggagcaaacttaaatggagcaaagatggactc 48204147  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 18923434 - 18923510
Alignment:
Q  70 tattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||| ||| |||||||||||||| || ||||||| |||||||||||||||  |||||||| | || ||||||||    
T  18923434 tattttgtcacatatcacacatccataatagtaaatgagataaatggagcaaactcaaatggaactaaaatggactc 18923510  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 23752805 - 23752869
Alignment:
Q  84 tcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcgt 148  Q
    ||||||||||||||| ||||||||||||||| ||||||| | ||| | |||||||||| ||||||    
T  23752805 tcacacatccatgatggtaaatgggataaattgagcaaaggtaaaagaagcaaagatgcactcgt 23752869  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 32492651 - 32492585
Alignment:
Q  54 ttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagca 120  Q
    ||||||||||||||||||||||| ||| | |||||||||||| |  || |||||| |||||||||||    
T  32492651 ttcaaccgttggatattattttgccacatgtcacacatccataaaggtcaatggggtaaatggagca 32492585  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 7705815 - 7705884
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagca 120  Q
    ||||| |||||||||||||| ||||| || |||| ||||||||||||   |||||| | |||||||||||    
T  7705815 aattttaaccgttggatattgttttgccatgtatgacacatccatgaaaataaatgaggtaaatggagca 7705884  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 48204964 - 48205017
Alignment:
Q  69 ttattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaa 122  Q
    |||||||| ||| | ||||||||||||||| ||||||||  |||||||||||||    
T  48204964 ttattttgccacatgtcacacatccatgatggtaaatggtgtaaatggagcaaa 48205017  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 27890663 - 27890568
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||||||||| |||| ||||||| ||| | ||||||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||||||    
T  27890663 aatttcaaccgtttgatactattttgccacatgtcacacatccatgatggtaaataggataaattgagcaaaggcaaatggagcaaagatggactc 27890568  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 49400260 - 49400355
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||||||||||||||| |||| ||| || |||||||| |||||  ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  49400260 aatttcaaccgttggatattcttttaacatgtgtcacacatgcatgaaggtaaatgggataaattgagcaaaggcaaatggagcaaagatggactc 49400355  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 49399641 - 49399549
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatgga 143  Q
    |||||||||| ||||||||| |||| |||||| |||||||||||| |  ||||||||| ||||| ||||||| ||||||||||||||||||||    
T  49399641 aatttcaaccattggatattcttttaacacgtgtcacacatccatcaaggtaaatggggtaaattgagcaaaggcaaatggagcaaagatgga 49399549  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 27891260 - 27891355
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||| ||||||||| ||||||| ||| | ||| ||||||||| | ||||||||||||||| ||| |||   |||||||||||||||||||||    
T  27891260 aatttcaatcgttggatactattttgccacatgtcagacatccatgttggtaaatgggataaattgagtaaagataaatggagcaaagatggactc 27891355  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 49385147 - 49385082
Alignment:
Q  84 tcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcgtt 149  Q
    ||||||||||||||| ||||||||| ||||||  |||||   ||||||||||||||||||||||||    
T  49385147 tcacacatccatgattgtaaatggggtaaatgatgcaaacttaaatggagcaaagatggactcgtt 49385082  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 49385775 - 49385851
Alignment:
Q  70 tattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||| ||| | ||||| ||||||||| ||||||||| ||||||| ||||    |||| ||||||||||||||||    
T  49385775 tattttgccacatgtcacatatccatgatggtaaatggggtaaatggtgcaatcctaaattgagcaaagatggactc 49385851  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 52238283 - 52238378
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||||| ||||||||| |||| |||||| ||||||||||||||  ||||||||| ||||| ||||||| ||||||| |||||||||||||||    
T  52238283 aatttcaaccattggatattcttttaacacgtgtcacacatccatgaaggtaaatggggtaaattgagcaaaggcaaatgaagcaaagatggactc 52238378  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 55633649 - 55633554
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||||||||| |||| ||||||| ||  | ||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  55633649 aatttcaaccgtttgatactattttgccatatgtcacacatccatgatggtaaatgggataaattgagcaaaggcaaacggagcaaagatggactc 55633554  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 52237730 - 52237633
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcgt 148  Q
    ||||||||| |||||||||| |||| ||| || ||||||||||||||  ||||||||| ||||| ||||||| ||||||||||||||||| |||||||    
T  52237730 aatttcaactgttggatattcttttaacatgtgtcacacatccatgaaggtaaatggggtaaattgagcaaaggcaaatggagcaaagatagactcgt 52237633  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 5469970 - 5470033
Alignment:
Q  84 tcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcg 147  Q
    |||||||||||| || ||||||||||||||| |||||||   ||||||||||||||||||||||    
T  5469970 tcacacatccataatggtaaatgggataaattgagcaaacttaaatggagcaaagatggactcg 5470033  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 53327551 - 53327458
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggac 144  Q
    |||||||||| ||||||||| |||| |||  | |||||||||| |||  ||||||| |||||||| |||| ||  |||||||||||||||||||    
T  53327551 aatttcaaccattggatattcttttaacaaatgtcacacatccgtgaaggtaaatgagataaatgaagcatatctaaatggagcaaagatggac 53327458  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 48957429 - 48957518
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagat 140  Q
    |||||||||| ||||||||| |||| |||| | || ||||||| |||  ||||||||| ||||||||||| ||  ||||| |||||||||    
T  48957429 aatttcaaccattggatattcttttaacacatgtcgcacatccgtgaaggtaaatgggttaaatggagcatatctaaatgaagcaaagat 48957518  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 33361142 - 33361047
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||||||||||||||| |||| ||| || ||||||||||||||  |||||||| |||||| ||||||| | |||||||||||||||||||||    
T  33361142 aatttcaaccgttggatattcttttaacatgtgtcacacatccatgaaggtaaatggtataaattgagcaaaggtaaatggagcaaagatggactc 33361047  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 20267260 - 20267165
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||||||||||||||| |||| ||| || || |||||||||||   |||||| ||||||| ||||||| | |||||||||||||||||||||    
T  20267260 aatttcaaccgttggatattcttttaacatgtgtcgcacatccatgaagataaatgagataaattgagcaaaggtaaatggagcaaagatggactc 20267165  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 20268963 - 20269058
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||||||||||||||| |||| ||| || || |||||||||||   |||||| ||||||| ||||||| | |||||||||||||||||||||    
T  20268963 aatttcaaccgttggatattcttttaacatgtgtcgcacatccatgaagataaatgagataaattgagcaaaggtaaatggagcaaagatggactc 20269058  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 41992765 - 41992700
Alignment:
Q  54 ttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagca 120  Q
    ||||||||||||||||||||||| ||| ||||||||||| || |  ||||||||| |||||||||||    
T  41992765 ttcaaccgttggatattattttgccacatatcacacatctataaaggtaaatggg-taaatggagca 41992700  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 41993326 - 41993406
Alignment:
Q  55 tcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagca 135  Q
    |||||||||||||| ||||||| ||| | |||||||||||| |  ||||||||| |||||||||  || | ||||||||||    
T  41993326 tcaaccgttggatactattttgtcacatgtcacacatccataaaggtaaatggggtaaatggagttaaggtaaatggagca 41993406  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 41282697 - 41282634
Alignment:
Q  82 tatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||||||| ||||| ||||||||  |||||||||||||   |||| ||||||||||||||||    
T  41282697 tatcacacatctatgatggtaaatggtgtaaatggagcaaacttaaat-gagcaaagatggactc 41282634  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 17626323 - 17626416
Alignment:
Q  52 atttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||||||||||||||||| |  ||||| ||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||| ||||||||    
T  17626323 atttcaaccgttggatattattataccacgtgtcacacatccatgatggtaaatggggtaaatggtgcaaagacaaatggagcaaa-atggactc 17626416  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 17625729 - 17625633
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcg 147  Q
    |||||||||  ||||||||| ||||||||||| || |||||||||||  ||||||||| ||||||| ||||    ||||||||||||||||||||||    
T  17625729 aatttcaactattggatattcttttgacacgtgtcgcacatccatgaaggtaaatggggtaaatggtgcaagcctaaatggagcaaagatggactcg 17625633  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 38443110 - 38443034
Alignment:
Q  70 tattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||| ||| | ||||||||||||||| ||||||||| ||||||||||| |   |||||||||||||||||||||    
T  38443110 tattttgccacatgtcacacatccatgatggtaaatggggtaaatggagcagacttaaatggagcaaagatggactc 38443034  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 38443621 - 38443667
Alignment:
Q  100 gtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||||| |||||||||||||   |||||||||||||||||||||    
T  38443621 gtaaatggggtaaatggagcaaacttaaatggagcaaagatggactc 38443667  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 129329 - 129423
Alignment:
Q  52 atttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    |||||||||||||||||||| | |  ||||| |||||||||||||||  |||||| | ||||||| |||||  ||||||||||||| ||||||||    
T  129329 atttcaaccgttggatattagtatatcacgtgtcacacatccatgatgataaatgaggtaaatggtgcaaagacaaatggagcaaatatggactc 129423  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 128756 - 128663
Alignment:
Q  51 aatttcaaccgttggatattattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggac 144  Q
    |||||||||| || |||||| ||||||||||| || |||||| ||||  |||||||| |||||||| ||||    |||||||||||||||||||    
T  128756 aatttcaaccattcgatattcttttgacacgtgtcgcacatctatgaaggtaaatggaataaatggtgcaagcctaaatggagcaaagatggac 128663  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 31600524 - 31600447
Alignment:
Q  70 tattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactcg 147  Q
    ||||||| ||| | |||||||||||||||  |||||||| |||||||||||| |  ||||||||||  ||||||||||    
T  31600524 tattttgccacatgtcacacatccatgatgataaatggggtaaatggagcaagtctaaatggagcatggatggactcg 31600447  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 3295789 - 3295865
Alignment:
Q  70 tattttgacacgtatcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggactc 146  Q
    ||||||| ||| | ||||| ||||||||| ||||||||| |||||||||||||   ||||| |||||||| ||||||    
T  3295789 tattttggcacatgtcacatatccatgatggtaaatggggtaaatggagcaaacctaaatgaagcaaagacggactc 3295865  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 28548402 - 28548463
Alignment:
Q  84 tcacacatccatgatcgtaaatgggataaatggagcaaatgcaaatggagcaaagatggact 145  Q
    |||||||||||| ||  |||||| ||||||| ||||||| | |||||||| |||||||||||    
T  28548402 tcacacatccataatgataaatgagataaattgagcaaaagtaaatggagtaaagatggact 28548463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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