View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14757_low_36 (Length: 227)
Name: NF14757_low_36
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 42927883 - 42927696
Alignment:
| Q |
7 |
gtgaggaactcaaatgtgagaggtttttgtcgtcacatgtactccatgcatgaacatgtaatttgtgaccattttttaagtttatatatgaagtgttttg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42927883 |
gtgaggaactcaaatgtgagaggtttttgtcgtcacatgtactccatgcatgaacatgtaatttgtgaccattttttaagtttatatatgaagtgttttg |
42927784 |
T |
|
| Q |
107 |
accgccacaaaatatttattttcttgtagcgatttcttgtactcgtggtgatccaatcgatgcaagtttgtaaataaaacaaaacaat |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42927783 |
accgccacaaaatatttattttcttgtagcgatttcttgtactcgtggtgatccaatcgatgcaagtttgtaaataaaacaaaacaat |
42927696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University