View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_low_38 (Length: 219)
Name: NF14757_low_38
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_low_38 |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0048 (3 HSPs) |
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Alignment Details
Target: scaffold0185 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 7127 - 6935
Alignment:
| Q |
20 |
cacattgcataaaactcaaacttcttttgcttctctaatattgcgcttcctcggctagtttctttctcatgtttttctttggtggacattttctttggtt |
119 |
Q |
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| T |
7127 |
cacattgcataaaactcaaacttcttttgcttctctaatattgcgcttcctcggctagtttctttctcatgttttcctttggtggacattttctttggtt |
7028 |
T |
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| Q |
120 |
gtgataactttggactatctgaagataaagttgtcaaagacgattgagtagctttggttactttcttatacgttgaataaatattcttcgaca |
212 |
Q |
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| T |
7027 |
gtgataactttggactatctgaagataaagttgtcaaagacgattgagtggctttggttactttcttatacgtcgaataattatgctttgaca |
6935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 47868 - 47682
Alignment:
| Q |
18 |
aacacattgcataaaactcaaacttcttttgcttctctaatattgcgcttcctcggctagtttctttctcatgtttttctttggtggacattttctttgg |
117 |
Q |
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| T |
47868 |
aacaaattgcatgaaactcaaacttcttttatttctctaatattgcgcttcttcggctagtatctttctcatgttttcctttggtggacgtgatctttga |
47769 |
T |
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| Q |
118 |
ttgtgataactttggactatctgaagataaagttgtcaaagacgattgagtagctttggttactttcttatacgttgaataaatatt |
204 |
Q |
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| T |
47768 |
ttgtgatacctttgaactatctgaagataaagttgacaaagacgattgcgtagctttggttactttcttatacgtcgaataaatatt |
47682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 60467 - 60286
Alignment:
| Q |
23 |
attgcataaaactcaaacttcttttgcttctctaatattgcgcttcctcggctagtttctttctcatgtttttctttggtggacattttctttggttgtg |
122 |
Q |
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| T |
60467 |
attgcataaaactcaaaattcttttgcttctctattattgtgcttcctcggcaagtatctttctcttgttttcctttggtggacatgatctttgattgtg |
60368 |
T |
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| Q |
123 |
ataactttggactatctgaagataaagttgtcaaagacgattgagtagctttggttactttcttatacgttgaataaatatt |
204 |
Q |
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| T |
60367 |
atacctttgaactatctgaagatatagctgtcaaagacgattcagtagctttggctactttcttatacgttgaataaatatt |
60286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 85366 - 85560
Alignment:
| Q |
18 |
aacacattgcataaaactcaaacttcttttgcttctctaatattgcgcttcctcggctagtttctttctcatgtttttctttggtggacattttctttgg |
117 |
Q |
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| T |
85366 |
aacaaattgcacgaaactcaaacttcttttgtttctctaatattgcgctttcttgtttagtttctttctcatgttttcctttggtggacatgttctttga |
85465 |
T |
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| Q |
118 |
ttgtgataactttggactatctgaagataaagttgtcaaagacgattgagtagctttggttactttcttatacgttgaataaatattcttcgaca |
212 |
Q |
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| T |
85466 |
ttgtgataccgttgaattatctgaagataaacttgtcaaagacgattgagtggcgttggttactttcttatacgtcgaataattatgctttgaca |
85560 |
T |
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