View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_low_7 (Length: 411)
Name: NF14757_low_7
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 14275637 - 14275243
Alignment:
| Q |
1 |
catgcgtgaatgaaattcagtcaatagtttaaccttctcatatctaataactttatgtttatatttgttgctgcagagtcttgagcggtgccaattgaaa |
100 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14275637 |
catgcgtgaatgaaactcagttaatagtttaaccttctcatatctaataactttatgtttatatttgttgctgcagagtcttgagcggtgtcaattgaaa |
14275538 |
T |
|
| Q |
101 |
gaagctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaatctactcataaatttcatgttttagaagttttgttataaacaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14275537 |
gaagctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaatctacttataaatttcatgttttagaagttttgttataaacaaatg |
14275438 |
T |
|
| Q |
201 |
ttagtgattaatttgtcagcagtagagatcaatcgaatgttgaacctcttacataatatttatccagcgtcccaacacacatcattggactactccttca |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14275437 |
ttagtgattaatttgtcagcagtagagatcgatcgaatgttgaacctcttacataatatttatccagcgtcccaacacacatcattggactactccttca |
14275338 |
T |
|
| Q |
301 |
tagattcattttttaatagtttaatcgaatgtgataagaaaatatgaactgaaatgtgttcattatactattttgtcagtggttgatggtggaga |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14275337 |
tagattcattttttaatagtttaatcgaatgtgataagaaaatatgaactgaaatgtgttcattatactattttgttagtggttgatggtggaga |
14275243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14297504 - 14297283
Alignment:
| Q |
1 |
catgcgtgaatgaaattcagtcaatagtttaaccttctcatatctaataactttatgtttatatttgttgctgcagagtcttgagcggtgccaattgaaa |
100 |
Q |
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|||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
14297504 |
catgtgtgaatgaaattcagttaatagttttaccttctcatatctaataactttatgtttatgtttgtttctgcagagtcttgagcggtgccaattgaaa |
14297405 |
T |
|
| Q |
101 |
gaagctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaatctactcataaatttcatgttttagaagttttgttataaacaaatg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| | ||||| |
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| T |
14297404 |
gatgctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaatcaactcataaatctcatgttttagaagtttttttatagataaatg |
14297305 |
T |
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| Q |
201 |
ttagtgattaatttgtcagcag |
222 |
Q |
| |
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|| |||||||||||||| |||| |
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| T |
14297304 |
ttggtgattaatttgtcggcag |
14297283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 55 - 219
Target Start/End: Complemental strand, 14313517 - 14313354
Alignment:
| Q |
55 |
atgtttatatttgttgctgcagagtcttgagcggtgccaattgaaagaagctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaa |
154 |
Q |
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||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14313517 |
atgttcatctttgtttctgcagagtcttgagcggtgccaattgaaagaagtggtggctgcaaagcctgagaaactcgacgctttaggtgatcaaataaac |
14313418 |
T |
|
| Q |
155 |
tctactcataaatttcatgttttagaagttttgttataaacaaatgttagtgattaatttgtcag |
219 |
Q |
| |
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||| ||||||||| |||| || | ||||| ||||| |||||||||||| |||||||||||| |
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| T |
14313417 |
tcttctcataaatatcatattctcattgtttt-ttataggcaaatgttagtggttaatttgtcag |
14313354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 14313279 - 14313194
Alignment:
| Q |
310 |
tttttaatagtttaatcgaatgtgataagaaaatatgaactgaaatgtgttcattatactattttgtcagtggttgatggtggaga |
395 |
Q |
| |
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|||| |||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
14313279 |
ttttaaatagtttaatcgaatgttataagaatgtatgagctgaaatgtgtttattatactattttgttagtggttgatggtggaga |
14313194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 14297266 - 14297227
Alignment:
| Q |
265 |
cagcgtcccaacacacatcattggactactccttcataga |
304 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||||| |
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| T |
14297266 |
cagcgtcccgacacacatcactggactactccttcataga |
14297227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 14297213 - 14297163
Alignment:
| Q |
345 |
tgaactgaaatgtgttcattatactattttgtcagtggttgatggtggaga |
395 |
Q |
| |
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|||||||||||||| | | |||| |||||||| |||||||||||||||||| |
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| T |
14297213 |
tgaactgaaatgtgcttactatattattttgttagtggttgatggtggaga |
14297163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 64 - 167
Target Start/End: Complemental strand, 25880491 - 25880388
Alignment:
| Q |
64 |
tttgttgctgcagagtcttgagcggtgccaattgaaagaagctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaatctactcat |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||| |
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| T |
25880491 |
tttgttgctgcagagtcttgagcggtgccaattgaaagaagtggtggctgcaaagcctgagaaacttgaggcttcaggtgatcaaataaactcttgtcat |
25880392 |
T |
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| Q |
164 |
aaat |
167 |
Q |
| |
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|||| |
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| T |
25880391 |
aaat |
25880388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 396
Target Start/End: Complemental strand, 25880384 - 25880303
Alignment:
| Q |
318 |
agtttaatcgaatgtgataagaaaatatgaac--tgaaatgt-gttcattatactattttgtcagtggttgatggtggagat |
396 |
Q |
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|||||||| ||||||||||||||||||||| | | |||| ||| ||||||||||||||| ||||||||||||||||||| |
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| T |
25880384 |
agtttaattcaatgtgataagaaaatatgaataataacatgttgtttattatactattttgttagtggttgatggtggagat |
25880303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 28943079 - 28943107
Alignment:
| Q |
188 |
ttataaacaaatgttagtgattaatttgt |
216 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
28943079 |
ttataaacaaatgttagtgattaatttgt |
28943107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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