View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14757_low_9 (Length: 402)
Name: NF14757_low_9
Description: NF14757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14757_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 9454501 - 9454121
Alignment:
| Q |
19 |
aaaatgccaacatctggatcttcctccaacaacagtcatcatttcacttcacggctttttgaatctcctcgctgcagaaaatctaagtccactttcaaga |
118 |
Q |
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| T |
9454501 |
aaaatgccaacatctggatcttcctccaacaactgtcatcatttcacttcacgactttgtgaatctcctcgctgcagaaaatctaagtccaatttcaaga |
9454402 |
T |
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| Q |
119 |
tggttgacttgattgttttattatgcaggaaaccattgttagtatggctgttgcaggagctatagttggtgctgcatttggaggatatatgaatgacaag |
218 |
Q |
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| T |
9454401 |
tggttgacttgattgttttattatgcaggaaaccattgttagtatggctgttgcaggagctatagttggtgcagcatttggaggatatatgaatgacaag |
9454302 |
T |
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| Q |
219 |
atgggaaggaagaaaactattttaatggctgatgtggtgttcgttgcaggtgcattagttatgacggctgtgccagctccatagggtatccttagcggtg |
318 |
Q |
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| T |
9454301 |
atgggaaggaagaaaactattttaatggcagatgtggtgttcgttgcaggtgcattagttatggctgctgctccagctccttgggttatcattatcggaa |
9454202 |
T |
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| Q |
319 |
tagttttagttagcttaggatttggtgttgcatccatgatttctcctcgatacttctcagcagcgtccactactacgatta |
399 |
Q |
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| T |
9454201 |
gagttttagttggcttaggagttggtgttgcatccatgactgctcctctatacatctcagaagcttcccctgctaagatta |
9454121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 82 - 298
Target Start/End: Complemental strand, 9443176 - 9442960
Alignment:
| Q |
82 |
tctcctcgctgcagaaaatctaagtccactttcaagatggttgacttgattgttttattatgcaggaaaccattgttagtatggctgttgcaggagctat |
181 |
Q |
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| T |
9443176 |
tctcctcaccgcagagaatctaagtccaatttcaagatggctgacttaattgttttattatgcaggaaaccattgttagtatggcttctgcaggagctat |
9443077 |
T |
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| Q |
182 |
agttggtgctgcatttggaggatatatgaatgacaagatgggaaggaagaaaactattttaatggctgatgtggtgttcgttgcaggtgcattagttatg |
281 |
Q |
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| T |
9443076 |
aattggtgcagcatttggaggatatatgaatgacaagatgggaaggaagaaaactattttaatggctgatgtggtgttcgttgcaggtgcattagttatg |
9442977 |
T |
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| Q |
282 |
acggctgtgccagctcc |
298 |
Q |
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| T |
9442976 |
gctgctgctccagctcc |
9442960 |
T |
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