View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14758_high_10 (Length: 425)
Name: NF14758_high_10
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_high_10 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 78 - 425
Target Start/End: Original strand, 1062892 - 1063237
Alignment:
| Q |
78 |
ttttgaatctgaatcatgttctgaaatgttcccttattactaataactaatagaggataaattatagatccagagttggattgactaaccatgtcttggt |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1062892 |
ttttgaatctgaatcatgttctgaaatgttcccttattactaataactaatagaggataaattatagatccagagttggattgactaaccctgtcttggt |
1062991 |
T |
|
| Q |
178 |
tataaaaaaccaacagtatctactgcactttccttcaataacaggttagaagcttttcagattgaaatttttgccattagagctgcagtagcattgttat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1062992 |
tataaaaaaccaacagtatctactgcactttccttcaataacaggttagaagtttttcagattgaaatttttgccattagagctgcagtagcattgttat |
1063091 |
T |
|
| Q |
278 |
taaaatcttgatcagaattctgaaatactacgatttgttgccttgccgatctgaatcctaagtagaattgtaaactatgcaatatccgttcgaaattgtt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1063092 |
taaaatcttgatcagaattctgaaatactacgatttgttgtcttgccgatcttaatcctaagtagaattgtaaac--tgcaatatccgttcgaaattgtt |
1063189 |
T |
|
| Q |
378 |
tatgtttaagccattttgtgttgccttataattggcgcgtccttgatg |
425 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1063190 |
tatgtttaagcgattttgtgttgccttataattggcgcgtccgtgatg |
1063237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 1062819 - 1062868
Alignment:
| Q |
17 |
atatagttagttctaaaattgttttggttcatcgcactgaaggtatgaag |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1062819 |
atatagttagttctaaaattgttttggttcatcgcattgaaggtatgaag |
1062868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 417
Target Start/End: Original strand, 2793827 - 2793918
Alignment:
| Q |
326 |
atctgaatcctaagtagaattgtaaactatgcaatatccgttcgaaattgtttatgtttaagccattttgtgttgccttataattggcgcgt |
417 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||| || |||| |||| |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
2793827 |
atctgaatcttaagtggaatcctaaactatgcaaagtctgttcaaaatcgtttatgtttaagcgattttgttctgccttataattggcgcgt |
2793918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 29141067 - 29141032
Alignment:
| Q |
96 |
ttctgaaatgttcccttattactaataactaataga |
131 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29141067 |
ttctgaaatgttcccttattactaatgactaataga |
29141032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 17768337 - 17768397
Alignment:
| Q |
323 |
ccgatctgaatcctaagtagaattgtaaactatgcaatatccgttcgaaattgtttatgtt |
383 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
17768337 |
ccgatctgaatcctgagcagaatcctaaactatgcaaaatctgttcgaaatcatttatgtt |
17768397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University