View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14758_high_13 (Length: 373)
Name: NF14758_high_13
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_high_13 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 49425755 - 49426108
Alignment:
| Q |
19 |
tcaattgatgaaaaatgttttgagagatcaactactcgtttaatggaagtaagttgagtttttatgagcttggtgtttgtggcttttatgttttatagaa |
118 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49425755 |
tcaattgatgaaaaatgttt-gagatatcaactactcgtttaatggaagtaagttaagtttttatgagcttggtgtttgtggcttttatgttttatgaaa |
49425853 |
T |
|
| Q |
119 |
taatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49425854 |
taatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagtt |
49425953 |
T |
|
| Q |
219 |
gaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49425954 |
gaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttc |
49426053 |
T |
|
| Q |
319 |
aaaagctcccttctcattctcatagcagtatttttcaaaacttatcagacatttt |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49426054 |
aaaagctcccttctcattctcatagcagtatttttcaaaacttatcagacatttt |
49426108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 325
Target Start/End: Original strand, 49423669 - 49423904
Alignment:
| Q |
91 |
gtgtttgtggcttttatgttttatagaataatttgctcgagtacatgaagttgtaacatgacattgccaatatgaattggc-gaaatcttaagagcgtaa |
189 |
Q |
| |
|
|||| ||| |||||||| ||| || |||||||||||||||| |||||||||||||| ||| ||||| ||| || | |||| ||||| || |||| ||| |
|
|
| T |
49423669 |
gtgtctgttgcttttatatttcatgaaataatttgctcgagtgcatgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataa |
49423768 |
T |
|
| Q |
190 |
gaaatgctatccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaag |
289 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| ||||||||| || || |||||||| | ||||||||| |||||||| ||| ||||||||| |
|
|
| T |
49423769 |
aaaatgttatccctaatgtcttgaaagttgaatctatcaaccatctccaactttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaag |
49423868 |
T |
|
| Q |
290 |
tttccccaaatgattcattaagacagttcaaaagct |
325 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| |
|
|
| T |
49423869 |
cttccccaaatggcttgttaagacagttcaaaagct |
49423904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 340
Target Start/End: Complemental strand, 43363344 - 43363144
Alignment:
| Q |
135 |
atgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccatc |
234 |
Q |
| |
|
||||||||||||||||| |||| ||| || | ||| |||| ||||||||| ||| ||||| ||||||| ||||||||||||||||| |||| || |||| |
|
|
| T |
43363344 |
atgaagttgtaacatga--ttgcaaatgtgcaatggtgaaagcttaagagcataa-aaatgttatcccttatgtcttgaaagttgaatctattaatcatc |
43363248 |
T |
|
| Q |
235 |
tcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagctcccttctca |
334 |
Q |
| |
|
|| ||||| |||||||||| | ||||||| |||||| ||||| || |||||| |||||||||||| ||||||||||| ||||||| || |||||||| |
|
|
| T |
43363247 |
tcctacat--agtttaaactggttgttgaacaattgaagtgaaacactaaacaagcttccccaaatgactcattaagacaattcaaaaacttccttctca |
43363150 |
T |
|
| Q |
335 |
ttctca |
340 |
Q |
| |
|
|||||| |
|
|
| T |
43363149 |
ttctca |
43363144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 361
Target Start/End: Complemental strand, 49416802 - 49416757
Alignment:
| Q |
316 |
ttcaaaagctcccttctcattctcatagcagtatttttcaaaactt |
361 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
49416802 |
ttcaaaagctcccttgtcattctcattgcagtattttttaaaactt |
49416757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 17640994 - 17641049
Alignment:
| Q |
197 |
tatccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaa |
252 |
Q |
| |
|
||||||||| |||||||||||||| |||| |||||| || ||||||||||||||| |
|
|
| T |
17640994 |
tatccctaaattcttgaaagttgaatctatcaaccatgtcctacatttagtttaaa |
17641049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University