View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14758_high_25 (Length: 248)
Name: NF14758_high_25
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 49426200 - 49426430
Alignment:
| Q |
1 |
atggataacatagattttgttgaagtaatgaacaagtnnnnnnnnnnggtctaaagttaaaggataatttttcttaaacttgtgaactgatacaaaattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49426200 |
atggataacatagattttgttgaagtaatgaacaagtaaaaaaaaaaggtctaaagttaaaggataatttttcttaaacttgtgaactgatacaaaattc |
49426299 |
T |
|
| Q |
101 |
aagagcatcaaggttcactattcaaaccatcaaacctaacagttgcaaagtagaagtgaatagaagaactgctacttacatagaaccttgcttgcaatcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49426300 |
aagagcatcaaggttcactattcaaaccatcaaacctaacagttgcaaagtagaagtgaatagaagaactgctacttacatagaacctcgcttgcaatcg |
49426399 |
T |
|
| Q |
201 |
atcacaacttcacatataggggaggcccttg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49426400 |
atcacaacttcacatataggggaggcccttg |
49426430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 49432497 - 49432611
Alignment:
| Q |
60 |
aaggataatttttcttaaacttgtgaactgatacaaaattcaagagcatcaaggttcactattcaaaccatcaaacctaacagttgcaaagtagaagtga |
159 |
Q |
| |
|
|||||||||||||| | ||||||| || |||||||| ||||||| ||||||||||||| | |||||| || ||||||||||||||||||||||||| | |
|
|
| T |
49432497 |
aaggataatttttcctggacttgtgcaccgatacaaagttcaagaacatcaaggttcacaactcaaactgtcgaacctaacagttgcaaagtagaagtta |
49432596 |
T |
|
| Q |
160 |
atagaagaactgcta |
174 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
49432597 |
atagaagaactgcta |
49432611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43362634 - 43362598
Alignment:
| Q |
1 |
atggataacatagattttgttgaagtaatgaacaagt |
37 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
43362634 |
atggataacatagatttagttgaagtcatgaacaagt |
43362598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University