View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_high_28 (Length: 244)
Name: NF14758_high_28
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 32916332 - 32916272
Alignment:
| Q |
169 |
ttcctgagagatttgaccttaactaaagttcattaaccacttcaagccaagcacttgattt |
229 |
Q |
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| T |
32916332 |
ttcctgagagattcgaccttaactaaagttcattaaccacttcaagccatccacttgattt |
32916272 |
T |
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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 32916397 - 32916352
Alignment:
| Q |
5 |
agatcaaagaaaaaatatgaacattcaaagtaaaaccaataatgta |
50 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32916397 |
agatcaaagaaaaaatatgaacattcaaagtaaaaccaataatgta |
32916352 |
T |
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