View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_high_35 (Length: 220)
Name: NF14758_high_35
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_high_35 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 13891411 - 13891194
Alignment:
| Q |
3 |
agatggacatcatcaattcaaaaactatactatcaacctccattacagtcannnnnnncctcccaaaatctatctatgcaaaacattttctaacaacaac |
102 |
Q |
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| T |
13891411 |
agatgcacataatcaattcaaaaactatactatcaacctccatcacagtcatttttttcctcccaaaatctatctatgcaaaacattttctaacaacaac |
13891312 |
T |
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| Q |
103 |
actacacacttcttgcctatatcattaaccaaagaacaacaaaaactttcattcaacatttctatcatcatccattaaacctcaccccaacaaagacatc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13891311 |
actacacacttcttgcctatatcattaaccaaagaacaacaaaaactttcattcaacatttctatcatcatccattaaacctcaccccaacaaagacatc |
13891212 |
T |
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| Q |
203 |
atcagcaccttcagtaaa |
220 |
Q |
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|||||||||||||||||| |
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| T |
13891211 |
atcagcaccttcagtaaa |
13891194 |
T |
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