View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14758_high_8 (Length: 457)
Name: NF14758_high_8
Description: NF14758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14758_high_8 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Complemental strand, 41498634 - 41498191
Alignment:
| Q |
18 |
atagaatgattgtagaccagttatgtcatgagtgtggttcaaaggtcggattgtatgagcaagaaggccaacaacagggtctagtgggagtgagttagtt |
117 |
Q |
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| T |
41498634 |
atagaatgattgtagaccagttatgtcatgagtgtggttcaaaggtcggattgtatgagcaagaaggccaacaacagggtctagtgggagtgagttagtt |
41498535 |
T |
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| Q |
118 |
attttgtagtgtcaagaaagagtactgaatgagagtggttaagtagggaaggttaaatggtgtctgcaccaaagtaatccatgcaatcaacccaagataa |
217 |
Q |
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| T |
41498534 |
attttttagtgtcaagaaagagtactgaatgagagtggttaagtagggaaggttaaatggtgtctgcaccaaagtaatccatgcaatcaacccaagatga |
41498435 |
T |
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| Q |
218 |
acattcaaaggataggttactcctatgataaatttgaatagaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttg |
317 |
Q |
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| T |
41498434 |
acattcaaaggataggttactcctatgataaatttgaatagaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttg |
41498335 |
T |
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| Q |
318 |
ttagattatgggttaaggtttggttagccggtgaataa----aatgttttaggaagttgttatttattcttttagcttaaagtgtctacttttgatttct |
413 |
Q |
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| T |
41498334 |
ttagattatgggttaaggtttggttagccggtgaataaaatgaatgttttaggaagttgttatttattcttttagcttaaagtgtctacttttgatttct |
41498235 |
T |
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| Q |
414 |
tctctctgaaaacatcaaaccatcttttaagttatttcttcttc |
457 |
Q |
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| T |
41498234 |
tctctctgaaaacatcaaaccatcttttaagttatttcttcttc |
41498191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 236 - 389
Target Start/End: Complemental strand, 41513682 - 41513530
Alignment:
| Q |
236 |
actcctatgataaatttgaatagaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaagg |
335 |
Q |
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| T |
41513682 |
actcctattagaaattggaagagaaaacaccttccacgaaaagaaaatgagtttaatacaaagaaatatagtgaaaatcttgttggattttgggttgagg |
41513583 |
T |
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| Q |
336 |
tttggttagccggtgaataaaatgttttaggaagttgttatttattcttttagc |
389 |
Q |
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| T |
41513582 |
ttt-attaggccatggataaaatgttttaagaagttgttattgattcttttagc |
41513530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 236 - 389
Target Start/End: Complemental strand, 41522648 - 41522496
Alignment:
| Q |
236 |
actcctatgataaatttgaatagaaaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggttaagg |
335 |
Q |
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| T |
41522648 |
actcctatcagaaattggaagagaaaacaccttccacgaaaagaaaatgagtttaatacaaagaattatagtgaaaatcttgttggattatggattgagg |
41522549 |
T |
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| Q |
336 |
tttggttagccggtgaataaaatgttttaggaagttgttatttattcttttagc |
389 |
Q |
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| T |
41522548 |
tttgg-taggccatggataaaatgttttaaaaagttgttattgattcttttagc |
41522496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 41517606 - 41517526
Alignment:
| Q |
92 |
cagggtctagtgggagtgagttagttattttgtagtgtcaagaaagagtactgaatgagagtggttaagtagggaaggtta |
172 |
Q |
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| T |
41517606 |
cagggtctagtgggagggagttagttatttagcagcgtcgagaaatagtactgaatgagagtggttatgcaggggaggtta |
41517526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 33080386 - 33080315
Alignment:
| Q |
260 |
aaacaccttccattaaaagaaaatgagtctaataccaagaaatatagtgaaactcttgttagattatgggtt |
331 |
Q |
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| T |
33080386 |
aaacaccttcaacgaaaagaaaatgagtttaatacaaagaaatatagtgaaaatcttgttggattatgggtt |
33080315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 41508013 - 41507949
Alignment:
| Q |
92 |
cagggtctagtgggagtgagttagttattttgtagtgtcaagaaagagtactgaatgagagtggt |
156 |
Q |
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| T |
41508013 |
cagggtctaatgggtgggagttagttatttagtagcatcgagaaagagtactgaatgagagtggt |
41507949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 41508095 - 41508035
Alignment:
| Q |
25 |
gattgtagaccagttatgtcatgagtgtggttcaaaggtcggattgtatgagcaagaaggc |
85 |
Q |
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| T |
41508095 |
gattgtagaccaattgtgtcgtgagtatggttcaagggttggatggtatgagcaagaaggc |
41508035 |
T |
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